Motif HL_96426.1 Version HL_96426.1 of this group appears in releases 3.89 to 3.89
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 1-3 | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_8C3A_045 | 8C3A | 0.8539 | 2 | 1 | LSU rRNA | G | 2088 | U | 2090 | C | 2092 | cWW | |
| 2 | HL_5TBW_022 | 5TBW | 0.1058 | 3 | Externally structured | 1 | LSU rRNA | C | 958 | C | 959 | G | 963 | cWW |
| 3 | HL_8C3A_022 | 8C3A | 0.0000 | 3 | Externally structured | 1 | LSU rRNA | C | 954 | C | 955 | G | 959 | cWW |
| 4 | HL_4KR9_003 | 4KR9 | 0.3825 | 3 | X | RNA (39-MER) | G | 10 | G | 12 | C | 15 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CCUCAG | 2 |
| GGUAC | 1 |
| GUGUCC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| CUCA | 2 |
| GUA | 1 |
| UGUC | 1 |
Release history
| Release | 3.89 |
|---|---|
| Date | 2024-10-09 |
| Status | New id, > 2 parents |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (2)
- Externally structured (2)
- Basepair signature
- cWW-F
- Heat map statistics
- Min 0.11 | Avg 0.45 | Max 0.99
Coloring options: