Hairpin Loop Motif Atlas Release 3.89

#	Motif	Num Nts	Instances
1	HL_37824.1 View exemplar Basepair signature: cWW-F-F-F-F History status: New id, > 2 parents GNRA (333) GNRA variation (20) GNRA with GA tSW pair (4) GNRA related (2)	6	359
2	HL_43993.1 View exemplar Basepair signature: cWW-tWH-F-F-F-F-F History status: New id, > 2 parents T-loop with 2 stacked bulged bases (140) T-loop related (1)	0	141
3	HL_34617.1 View exemplar Basepair signature: cWW-tSW-F History status: New id, > 2 parents UNCG (55) UNCG variation (2)	0	57
4	HL_06059.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F-F History status: New id, > 2 parents tRNA anticodon loop (45) Anticodon loop related (6)	0	51
5	HL_43793.1 View exemplar Basepair signature: cWW-F History status: New id, > 2 parents Mini UNCG (42) Mini UNCG with extended bulge (2)	0	50
6	HL_93324.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F History status: New id, > 2 parents Pseudoknot geometry (26)	0	26
7	HL_71121.1 View exemplar Basepair signature: cWW-F History status: New id, > 2 parents Mini UNCG (2)	0	24
8	HL_77436.1 View exemplar Basepair signature: cWW-F-F-F-F-F History status: New id, > 2 parents T-loop related (9) tRNA anticodon loop (4) T-loop with 1 bulged base (2) Other HL (2) T-loop (1)	7	24
9	HL_58705.1 View exemplar Basepair signature: cWW-tWH-F-F-F History status: New id, > 2 parents T-loop with 2 bulged bases not stacked (11) T-loop with 2 stacked bulged bases (8) T-loop related (2) T-loop with 1 bulged base (2)	0	23
10	HL_48417.1 View exemplar Basepair signature: cWW-F-F History status: New id, > 2 parents	0	23
11	HL_33074.2 View exemplar Basepair signature: cWW-F-F-F-cWW-F-F-F History status: Updated, 2 parents U1 small nuclear ribonucleoprotein A binding hairpin (22)	0	22
12	HL_22584.3 View exemplar Basepair signature: cWW-tWS-cWW-F History status: Updated, 1 parent Fab BL3-6 binding hairpin with tSW (19) Other HL (3)	0	22
13	HL_82182.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F History status: New id, > 2 parents GNRA related (6) GNRA with extra cWW (5) GNRA with near cWW (3) T-loop related (2) tRNA anticodon loop (2) GNRA with extra tWH (1)	8	21
14	HL_64188.1 View exemplar Basepair signature: cWW-F-F-F-F-F History status: New id, > 2 parents tRNA anticodon loop (4) GNRA related (1)	0	18
15	HL_20811.1 View exemplar Basepair signature: cWW-cWS-F History status: New id, > 2 parents tRNA D-loop (17) Other HL (1)	5	18
16	HL_08002.12 View exemplar Basepair signature: cWW-cWW-F-tWH History status: Updated, 2 parents T-loop with unstacked turn (15) T-loop with 2 stacked bulged bases (1)	0	16
17	HL_27115.1 View exemplar Basepair signature: cWW-tSH-F-F-F-F History status: New id, > 2 parents GNRA wlth tandem sheared (12) Anticodon loop related (2) GNRA related (1)	8	16
18	HL_56334.1 View exemplar Basepair signature: cWW-F History status: New id, > 2 parents Mini UNCG (14) Mini UNCG related (2)	0	16
19	HL_36430.1 View exemplar Basepair signature: cWW-F-F-F-F History status: New id, > 2 parents GNRA (1)	0	15
20	HL_75293.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F-F-F History status: New id, > 2 parents	10	15
21	HL_30680.1 View exemplar Basepair signature: cWW-F-F-F-F-F History status: New id, > 2 parents Pseudoknot geometry (15)	0	15
22	HL_99538.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F History status: New id, > 2 parents	8	14
23	HL_40756.1 View exemplar Basepair signature: cWW-F-F-F History status: New id, 2 parents Pseudoknot geometry with 3' bulge (14)	0	14
24	HL_56357.1 View exemplar Basepair signature: cWW-F-F-F History status: New id, 2 parents	0	13
25	HL_79150.1 View exemplar Basepair signature: cWW-F-F-F-F-F History status: New id, > 2 parents Pseudoknot geometry (1)	0	12
26	HL_22523.1 View exemplar Basepair signature: cWW-F-F-F History status: New id, > 2 parents UNCG variation (1) GNRA related (1)	5	12
27	HL_49922.1 View exemplar Basepair signature: cWW-F-F-F History status: New id, 2 parents	0	12
28	HL_65794.1 View exemplar Basepair signature: cWW-F-F-F-F History status: New id, 2 parents Ribsomal LSU H95 (6) Pseudoknot geometry (5)	0	11
29	HL_73266.7 View exemplar Basepair signature: cWW-cWW-cSW-cSH-F-F-F History status: Updated, 2 parents	0	11
30	HL_66853.5 View exemplar Basepair signature: cWW-cWW-cHS-cWS History status: Updated, 2 parents	0	11
31	HL_47383.2 View exemplar Basepair signature: cWW-F-F-cWW-F-F History status: Updated, 2 parents	0	11
32	HL_04783.1 View exemplar Basepair signature: cWW-F-F-F History status: New id, > 2 parents GNRA related (3)	5	10
33	HL_15076.1 View exemplar Basepair signature: cWW-F-F-F-F-F History status: New id, > 2 parents Pseudoknot geometry (7)	0	10
34	HL_67216.9 View exemplar Basepair signature: cWW-cWW-F-tSH History status: Updated, 2 parents GNRA (1)	0	9
35	HL_86929.1 View exemplar Basepair signature: cWW-F History status: New id, > 2 parents	0	9
36	HL_64690.4 View exemplar Basepair signature: cWW-cSW-F-F-F-cWW History status: Updated, 2 parents	0	9
37	HL_78347.2 View exemplar Basepair signature: cWW-cWW-F-F History status: Updated, 1 parent	0	9
38	HL_56817.1 View exemplar Basepair signature: cWW-F-F-F History status: New id, 2 parents	0	8
39	HL_25222.2 View exemplar Basepair signature: cWW-cWW-F-F-cWW-F-F-F-F-F-F History status: Updated, 2 parents	13	8
40	HL_36684.3 View exemplar Basepair signature: cWW-F-F-F-F-cWW-F-F-F History status: Updated, 2 parents	0	8
41	HL_83767.2 View exemplar Basepair signature: cWW-F-F History status: Exact match	0	8
42	HL_19870.9 View exemplar Basepair signature: cWW-tHH-cWW-tHS-F-F-tWW History status: Updated, 2 parents	0	8
43	HL_67407.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F-F-F History status: New id, 2 parents	0	8
44	HL_23696.1 View exemplar Basepair signature: cWW-F-F History status: New id, > 2 parents UNCG variation (1)	0	8
45	HL_52953.1 View exemplar Basepair signature: cWW-F-F-F-F History status: New id, > 2 parents	0	8
46	HL_04171.6 View exemplar Basepair signature: cWW-cWW-F-F-F-F-F-F History status: Exact match	0	8
47	HL_56677.9 View exemplar Basepair signature: cWW-tWH-cWH-tSH-tHW-tHW-tSW History status: Updated, 1 parent	0	7
48	HL_40252.2 View exemplar Basepair signature: cWW-cWS-tHS-F History status: Updated, 2 parents	0	7
49	HL_44398.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F History status: New id, 1 parent	0	7
50	HL_32617.8 View exemplar Basepair signature: cWW-F-F-F History status: Updated, 2 parents tRNA D-loop (5) D-loop related (1)	0	7
51	HL_90642.8 View exemplar Basepair signature: cWW-tWH-F-F-F History status: Updated, 1 parent	0	7
52	HL_13963.1 View exemplar Basepair signature: cWW-F-F History status: New id, > 2 parents	0	7
53	HL_87954.1 View exemplar Basepair signature: cWW-tSW-F History status: New id, 2 parents	0	7
54	HL_20743.5 View exemplar Basepair signature: cWW-cWW-F-F-F-F History status: Updated, 2 parents	0	7
55	HL_35677.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F-F History status: New id, > 2 parents Pseudoknot with intercalation (3)	0	7
56	HL_23827.2 View exemplar Basepair signature: cWW-cWW-F-F-F-F-F History status: Updated, 2 parents	8	7
57	HL_82661.1 View exemplar Basepair signature: cWW-tSH-F-F-F-F-F History status: New id, 1 parent	0	7
58	HL_93616.1 View exemplar Basepair signature: cWW-cWS-F-F-F-F History status: New id, 1 parent tRNA D-loop (7)	0	7
59	HL_39334.8 View exemplar Basepair signature: cWW-cWS-tSW-F-F History status: Exact match	0	7
60	HL_83003.1 View exemplar Basepair signature: cWW-cWW-F-F-F History status: New id, > 2 parents	7	6
61	HL_19210.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F-F-F History status: New id, 2 parents	0	6
62	HL_83632.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F History status: New id, > 2 parents tRNA anticodon loop (4)	0	6
63	HL_55195.2 View exemplar Basepair signature: cWW-F History status: Updated, 2 parents	0	6
64	HL_61933.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F-F-F History status: New id, 1 parent Pseudoknot with intercalation (6)	10	6
65	HL_14199.2 View exemplar Basepair signature: cWW-tHS-cWW-F-F-F History status: Updated, 1 parent	0	6
66	HL_84570.1 View exemplar Basepair signature: cWW-cWW-F History status: New id, > 2 parents Other HL (1)	0	6
67	HL_97756.1 View exemplar Basepair signature: cWW-cSH-cWS-tSW-cSW-cWW-F-F-F-F History status: Exact match	0	6
68	HL_56131.1 View exemplar Basepair signature: cWW-F-F History status: New id, > 2 parents	0	6
69	HL_72777.1 View exemplar Basepair signature: cWW-F-cWH-F-F-F-F History status: Exact match	0	6
70	HL_43613.6 View exemplar Basepair signature: cWW-tWH-tWH-F History status: Exact match	0	6
71	HL_24596.1 View exemplar Basepair signature: cWW-F-F-F History status: New id, > 2 parents	5	6
72	HL_89881.2 View exemplar Basepair signature: cWW-tHW-F-F-F-F-F-F History status: Exact match	0	5
73	HL_54152.1 View exemplar Basepair signature: cWW-F-F History status: New id, > 2 parents	0	5
74	HL_45175.1 View exemplar Basepair signature: cWW-cWS-F-F History status: New id, > 2 parents tRNA D-loop (4)	0	5
75	HL_86769.4 View exemplar Basepair signature: cWW-cWW-cSH-F History status: Updated, 2 parents	0	5
76	HL_41019.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F-F-F History status: New id, > 2 parents Anticodon loop related (1)	0	5
77	HL_99769.1 View exemplar Basepair signature: cWW-cWW-F-F-F-F History status: New id, > 2 parents	0	5
78	HL_50779.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F-F History status: Exact match	0	5
79	HL_06226.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F-F-F History status: New id, 2 parents	0	5
80	HL_20554.1 View exemplar Basepair signature: cWW-tWH-F-F History status: New id, 2 parents	6	5
81	HL_38649.1 View exemplar Basepair signature: cWW-tSH-F-F-F-F-F-F History status: New id, > 2 parents	0	5
82	HL_59342.2 View exemplar Basepair signature: cWW-F-F-F-F-cWW-F-F History status: Updated, 2 parents	10	5
83	HL_09967.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F History status: New id, 2 parents tRNA anticodon loop (2) Anticodon loop related (2) Pseudoknot geometry (1)	0	5
84	HL_82710.1 View exemplar Basepair signature: cWW-F-F-F History status: New id, 2 parents	0	4
85	HL_49941.1 View exemplar Basepair signature: cWW-F-F-F-F-F History status: New id, > 2 parents tRNA D-loop (1)	0	4
86	HL_53971.1 View exemplar Basepair signature: cWW-F-F-F-F-F History status: New id, 2 parents	0	4
87	HL_73450.1 View exemplar Basepair signature: cWW-F-F History status: New id, 2 parents	0	4
88	HL_05475.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F History status: New id, 2 parents Pseudoknot (2)	0	4
89	HL_96426.1 View exemplar Basepair signature: cWW-F History status: New id, > 2 parents Externally structured (2)	0	4
90	HL_50537.6 View exemplar Basepair signature: cWW-F-F-F History status: Updated, 2 parents D-loop related (1)	0	4
91	HL_86877.1 View exemplar Basepair signature: cWW-cSH-F-F-F-F-F-F History status: Exact match	0	4
92	HL_02887.1 View exemplar Basepair signature: cWW-tWH-F-F-F-F-F-F History status: New id, 2 parents T-loop with 3 stacked bulged bases (3)	0	4
93	HL_26777.1 View exemplar Basepair signature: cWW-tWH-tWH-F-F History status: New id, 1 parent	0	4
94	HL_80922.1 View exemplar Basepair signature: cWW-F-F-F History status: New id, > 2 parents	0	4
95	HL_81100.1 View exemplar Basepair signature: cWW History status: New id, > 2 parents	0	4
96	HL_91015.1 View exemplar Basepair signature: cWW-cWH-F History status: New id, 1 parent	0	4
97	HL_42046.1 View exemplar Basepair signature: cWW-tSS-F-F-F History status: New id, 1 parent	0	4
98	HL_55436.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F-F-F History status: New id, 2 parents Pseudoknot geometry (1)	0	4
99	HL_84702.1 View exemplar Basepair signature: cWW-F-F-tHW-F-F-F-F History status: Exact match	0	4
100	HL_09260.1 View exemplar Basepair signature: cWW-F-F-F-F History status: New id, > 2 parents tRNA D-loop (2)	0	4
101	HL_98864.1 View exemplar Basepair signature: cWW-tWH-F-F-F-F-F-F History status: New id, 1 parent T-loop with unstacked turn (4)	0	4
102	HL_38808.1 View exemplar Basepair signature: cWW-cWW History status: New id, 2 parents	0	4
103	HL_01927.1 View exemplar Basepair signature: cWW-F-F-F-F-F History status: Exact match	0	4
104	HL_89199.1 View exemplar Basepair signature: cWW-F-F-F History status: New id, 1 parent Mini UNCG (4)	0	4
105	HL_07951.1 View exemplar Basepair signature: cWW-F-F History status: New id, > 2 parents tRNA D-loop (1)	0	4
106	HL_12758.2 View exemplar Basepair signature: cWW-tSH-F-cHW-cWH-F-F-tSH-cWH-cHW-cWH-cHW-cWH-cWH-cHW-tSH-cHW-cWH-F-cWH History status: Exact match G-quadruplex (3)	0	3
107	HL_31581.6 View exemplar Basepair signature: cWW-cHS-F-F-F-cWW-F-F-F History status: Updated, 2 parents	0	3
108	HL_94376.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F-F-F-F History status: New id, 2 parents Pseudoknot geometry (2)	0	3
109	HL_50142.3 View exemplar Basepair signature: cWW-cWW-F-F-F History status: Updated, 1 parent GNRA variation (1)	0	3
110	HL_86109.1 View exemplar Basepair signature: cWW-F-tWH-F-F-F-F-F-F-F History status: Exact match	0	3
111	HL_19598.1 View exemplar Basepair signature: cWW-F-F-F History status: New id, 2 parents	0	3
112	HL_90774.1 View exemplar Basepair signature: cWW-F-F-F History status: New id, 2 parents	5	3
113	HL_83808.2 View exemplar Basepair signature: cWW-tWW-cWW-F-F History status: Updated, 1 parent Pseudoknot (3)	0	3
114	HL_96927.1 View exemplar Basepair signature: cWW-F-F-F-F History status: New id, > 2 parents	6	3
115	HL_75033.1 View exemplar Basepair signature: cWW-cWW-F-F-F History status: New id, 2 parents	0	3
116	HL_03273.1 View exemplar Basepair signature: cWW-F-F-tWH-F-F-F History status: New id, 2 parents	0	3
117	HL_67667.2 View exemplar Basepair signature: cWW-F-F History status: Exact match	0	3
118	HL_81205.2 View exemplar Basepair signature: cWW-cWW-tWH-F-tWH-F-F-F-F-F History status: Exact match	0	3
119	HL_91503.6 View exemplar Basepair signature: cWW-cWW-F-F-F-F-F-F History status: Updated, 1 parent	0	3
120	HL_34636.1 View exemplar Basepair signature: cWW-cWW-F-F-F-F-F History status: New id, 2 parents	0	3
121	HL_07372.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F-F-F History status: New id, > 2 parents	0	3
122	HL_09452.1 View exemplar Basepair signature: cWW-F-F-F History status: New id, > 2 parents	0	3
123	HL_88364.1 View exemplar Basepair signature: cWW-cWW-F-F-F-F-F-F-F-F-F-F-F History status: New id, 2 parents Pseudoknot geometry (1)	0	3
124	HL_29129.1 View exemplar Basepair signature: cWW-tWH-F-F-F-F History status: New id, 2 parents	0	3
125	HL_68572.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F-F History status: New id, 2 parents	0	3
126	HL_07480.1 View exemplar Basepair signature: cWW-tSH-F-F-F History status: New id, 1 parent	0	3
127	HL_20751.2 View exemplar Basepair signature: cWW-tHW-F-F-F-F-F-F-F-F-F History status: Exact match	0	3
128	HL_68767.1 View exemplar Basepair signature: cWW-cWS-tSH-cWS-F History status: New id, 1 parent tRNA D-loop (3)	0	3
129	HL_49821.1 View exemplar Basepair signature: cWW-F-F-F-F-F History status: New id, 2 parents	7	3
130	HL_53504.2 View exemplar Basepair signature: cWW-cWW-tSH-F-F-F-F-F History status: Updated, 2 parents	10	3
131	HL_04642.1 View exemplar Basepair signature: cWW-F-F-F-F-F History status: New id, > 2 parents tRNA D-loop (1)	0	3
132	HL_73247.1 View exemplar Basepair signature: cWW-F-tWH-F-F-F-F-F-F-F-F-F-F History status: Exact match Pseudoknot geometry (3)	0	3
133	HL_02373.2 View exemplar Basepair signature: cWW-cWW-F-F-F-F-F-F-F-F-F-F-F History status: Updated, 2 parents	0	3
134	HL_04725.1 View exemplar Basepair signature: cWW-cWS-cWW-cWW-cWS History status: Exact match	0	2
135	HL_21372.1 View exemplar Basepair signature: cWW-F-cSH-F-F History status: Exact match	0	2
136	HL_60293.1 View exemplar Basepair signature: cWW-cWH-F-cWH-cHW-cHW-cWH-cHW-cWH-F-cWH-cWH-cWH-F History status: Exact match G-quadruplex (2)	0	2
137	HL_73255.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F History status: Exact match	0	2
138	HL_86012.1 View exemplar Basepair signature: cWW-tWH-F-F-F-F History status: New id, 1 parent T-loop with unstacked turn (2)	0	2
139	HL_08128.1 View exemplar Basepair signature: cWW-F-F-F-F History status: New id, 1 parent Mini UNCG with extended bulge (2)	0	2
140	HL_36540.1 View exemplar Basepair signature: cWW-F-F-F-F History status: New id, 1 parent	0	2
141	HL_02581.1 View exemplar Basepair signature: cWW-tSH-cWS-tSW-F-F-F History status: New id, 1 parent tRNA D-loop (2)	0	2
142	HL_90620.1 View exemplar Basepair signature: cWW-F-F-F-F-cSW-cSH-F History status: Exact match	0	2
143	HL_05206.1 View exemplar Basepair signature: cWW-F-F History status: New id, 2 parents	0	2
144	HL_96417.1 View exemplar Basepair signature: cWW-F-F-F History status: New id, 2 parents	0	2
145	HL_08510.1 View exemplar Basepair signature: cWW-F-F-cSH-F-F History status: Exact match	0	2
146	HL_21414.1 View exemplar Basepair signature: cWW-F-F-F History status: New id, 1 parent	0	2
147	HL_13577.1 View exemplar Basepair signature: cWW-F-F-F-F History status: New id, 2 parents	0	2
148	HL_26631.1 View exemplar Basepair signature: cWW-F-F-F History status: New id, 1 parent	0	2
149	HL_45177.2 View exemplar Basepair signature: cWW-cWW-F-F History status: Updated, 1 parent	5	2
150	HL_08513.1 View exemplar Basepair signature: cWW-tSH-tSS-tHS-F-F-F-F-F-F-F-F-F-F-F History status: Exact match	18	2
151	HL_45785.1 View exemplar Basepair signature: cWW-F-F-F-F-cSH-F-F History status: Exact match	0	2
152	HL_57863.1 View exemplar Basepair signature: cWW-F-F-cWH-cWH-F History status: Exact match G-quadruplex fragment (2)	0	2
153	HL_70802.1 View exemplar Basepair signature: cWW-cWS-F History status: New id, 1 parent D-loop related (1)	0	2
154	HL_08554.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F History status: New id, 2 parents	0	2
155	HL_74379.1 View exemplar Basepair signature: cWW-F-F-cSS-cSS-F-F-F History status: New id, 1 parent	11	2
156	HL_41725.1 View exemplar Basepair signature: cWW-F-F-F-F-F History status: New id, 2 parents	0	2
157	HL_55305.1 View exemplar Basepair signature: cWW-F-F-F-F-F History status: Exact match	0	2
158	HL_19906.1 View exemplar Basepair signature: cWW-F-F-F-F History status: New id, 2 parents	0	2
159	HL_47732.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F History status: New id, 1 parent	0	2
160	HL_62934.1 View exemplar Basepair signature: cWW-tSH-F History status: New id, 2 parents	0	2
161	HL_03333.1 View exemplar Basepair signature: cWW-F-F-F-cSH-F History status: Exact match	0	2
162	HL_68499.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F-F-F History status: New id, 2 parents	0	2
163	HL_81622.1 View exemplar Basepair signature: cWW-cWS-F-tSW-F-tSH-tSH-cWW-F-F History status: Exact match	0	2
164	HL_72714.3 View exemplar Basepair signature: cWW-cWW-cWH-F-F-F-F-F History status: Exact match	0	2
165	HL_01226.2 View exemplar Basepair signature: cWW-F-F-F-F-F History status: Exact match	0	2
166	HL_23713.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F-F History status: New id, 1 parent	0	2
167	HL_38701.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F-F-F History status: New id, 1 parent	0	2
168	HL_76390.1 View exemplar Basepair signature: cWW-F-F-F History status: New id, 2 parents Mini UNCG related (1)	0	2
169	HL_43517.1 View exemplar Basepair signature: cWW-F-F-F History status: New id, 2 parents Mini UNCG (1)	0	2
170	HL_81954.1 View exemplar Basepair signature: cWW-F-F-F-F History status: New id, 2 parents	6	2
171	HL_53099.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F-F-F History status: New id, 2 parents	0	2
172	HL_15574.1 View exemplar Basepair signature: cWW-F-F-F-F-F History status: New id, 2 parents	0	2
173	HL_29735.1 View exemplar Basepair signature: cWW-F-F-F-F History status: New id, 2 parents	0	2
174	HL_73183.1 View exemplar Basepair signature: cWW-tSH-tHW-F-F-F-F-F-F-F-F-F History status: Exact match Pseudoknot geometry with G-bulge (2)	0	2
175	HL_98870.1 View exemplar Basepair signature: cWW-tSH-tWW-F-F-F-F-F History status: Exact match	0	2
176	HL_10456.1 View exemplar Basepair signature: cWW-F-cWW-tWW-F-tHW-F-F-F-F-F-F-F History status: Exact match	0	2
177	HL_39243.1 View exemplar Basepair signature: cWW-F-F-F-F History status: New id, 2 parents	0	2
178	HL_16398.1 View exemplar Basepair signature: cWW-F-F-F-F-tSW-F History status: New id, 2 parents	0	2
179	HL_36335.1 View exemplar Basepair signature: cWW-F-F-cSS-cSS-F History status: New id, 1 parent	0	2
180	HL_59735.3 View exemplar Basepair signature: cWW-F-F-F-F-F History status: Updated, 1 parent	0	2
181	HL_10540.1 View exemplar Basepair signature: cWW-F-F-F-F-F History status: New id, 2 parents	0	2
182	HL_65110.1 View exemplar Basepair signature: cWW-tSH-F-F History status: New id, 2 parents	6	2
183	HL_78940.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F-F-F-F History status: New id, 2 parents	0	2
184	HL_89457.1 View exemplar Basepair signature: cWW-F-F-F History status: New id, 2 parents	0	2
185	HL_16991.1 View exemplar Basepair signature: cWW-cWH-cWH-F-cWH-F History status: Exact match G-quadruplex fragment (1)	0	1
186	HL_30839.1 View exemplar Basepair signature: F-F-F History status: New id, 1 parent	0	1
187	HL_70228.1 View exemplar Basepair signature: cWW-F-F-F-F-F History status: Exact match	0	1
188	HL_93652.1 View exemplar Basepair signature: cWW-F-F-F-F History status: New id, 1 parent	6	1
189	HL_99040.1 View exemplar Basepair signature: F-F-F-F-F-F History status: New id, 1 parent	0	1
190	HL_02483.1 View exemplar Basepair signature: cWW-tWH-F-cSH-F-F-F History status: Exact match	0	1
191	HL_24792.1 View exemplar Basepair signature: cWW-cWS-F-F-F History status: New id, 1 parent	0	1
192	HL_18423.1 View exemplar Basepair signature: cWW-tSH-tHS-F History status: New id, 1 parent	0	1
193	HL_70550.1 View exemplar Basepair signature: cWW-tSH-F-F-F-F History status: New id, 1 parent	0	1
194	HL_21400.1 View exemplar Basepair signature: cWW-tWH-tSW-cWW-cWH-cHW-cWH-cWH-cHW-cWH-cHW-cWH-cWH-cWH-cWH-cWH History status: Exact match G-quadruplex (1)	0	1
195	HL_60914.1 View exemplar Basepair signature: cWW-F History status: Exact match	0	1
196	HL_12870.1 View exemplar Basepair signature: cWW-tHW-F-F-F-F-F-F-F-F-F History status: Exact match	0	1
197	HL_66482.1 View exemplar Basepair signature: cWW-cWW-tWW-F-F-tWH-F-F-F-F-F-F-F-F History status: Exact match	0	1
198	HL_80362.1 View exemplar Basepair signature: cWW-F-F-F History status: New id, 1 parent	0	1
199	HL_56845.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F-F-F-F-F-F-F-F-F History status: Exact match	0	1
200	HL_70751.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F-F-F-F History status: New id, 1 parent	0	1
201	HL_50318.1 View exemplar Basepair signature: cWW-cSH-F-F History status: Exact match	0	1
202	HL_61202.1 View exemplar Basepair signature: cWW-F-F-F History status: New id, 1 parent GNRA related (1)	0	1
203	HL_99748.1 View exemplar Basepair signature: cWW-F-F-cSH History status: New id, 1 parent D-loop related (1)	0	1
204	HL_02811.1 View exemplar Basepair signature: cWW-F-F History status: Exact match	0	1
205	HL_54801.1 View exemplar Basepair signature: cWW-cWW-F-F History status: New id, 1 parent	0	1
206	HL_80411.1 View exemplar Basepair signature: cWW-F-cSH-F-F-F-F History status: New id, 1 parent	0	1
207	HL_57022.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F History status: New id, 1 parent Pseudoknot (1)	8	1
208	HL_70773.1 View exemplar Basepair signature: cWW-tSW-F-F History status: New id, 1 parent UNCG variation (1)	0	1
209	HL_22135.1 View exemplar Basepair signature: cWW-F-F History status: New id, 1 parent	0	1
210	HL_36790.1 View exemplar Basepair signature: F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F History status: Exact match	0	1
211	HL_61782.1 View exemplar Basepair signature: cWW-F-F-F-F-F History status: New id, 1 parent tRNA D-loop (1)	0	1
212	HL_74292.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F-F-F History status: New id, 1 parent	0	1
213	HL_41363.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F-F-F History status: New id, 1 parent	0	1
214	HL_33983.1 View exemplar Basepair signature: cWW-F-F-F-F-F History status: New id, no parents	0	1
215	HL_02966.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F History status: Exact match	0	1
216	HL_26934.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F History status: New id, 1 parent	0	1
217	HL_58224.1 View exemplar Basepair signature: cWW-F-F-F-F-F History status: Exact match	0	1
218	HL_97733.1 View exemplar Basepair signature: cWW-F-F-F-cSH-F History status: Exact match	0	1
219	HL_08602.1 View exemplar Basepair signature: cWW-cSS-F-cSS-F-F-F-F-F History status: Exact match	0	1
220	HL_38046.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F History status: New id, 1 parent	0	1
221	HL_50851.1 View exemplar Basepair signature: cWW-cWH-cWH-cWH-cWH-F History status: Exact match G-quadruplex fragment (1)	0	1
222	HL_62041.1 View exemplar Basepair signature: cWW-cWS History status: New id, 1 parent D-loop related (1)	0	1
223	HL_87463.1 View exemplar Basepair signature: cWW-cWW-F-F-F-F-F History status: New id, 1 parent	0	1
224	HL_14757.1 View exemplar Basepair signature: cWW-cWW-F-F-tSW-tWW-cWW-tHW-tSW-F-cWH-F History status: New id, no parents	0	1
225	HL_06301.1 View exemplar Basepair signature: F-F-F-F-F-F-F History status: New id, 1 parent	0	1
226	HL_58539.1 View exemplar Basepair signature: cWW-tWS-F-tHW-F-F-F-F-F-F-F-F History status: Exact match	0	1
227	HL_71925.1 View exemplar Basepair signature: F-F-F-F-F-F-F-F-F-F-F-F History status: New id, 1 parent	0	1
228	HL_00317.1 View exemplar Basepair signature: cWW-F-cSS-F-F-F-F-F-F-F-F-F-F-F-F-F-F History status: Exact match	0	1
229	HL_52463.1 View exemplar Basepair signature: cWW-F-F-F History status: New id, 1 parent	0	1
230	HL_28904.1 View exemplar Basepair signature: cWW-F-F-tWH-cWH-tSH-tHW-F-F-F-F-F History status: New id, 1 parent	16	1
231	HL_42545.1 View exemplar Basepair signature: cWW-F-F-F-F-cSW-cSH-F History status: New id, 1 parent	0	1
232	HL_91641.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F-F-F-cSW-F-F-F-F History status: New id, 1 parent	0	1
233	HL_35354.1 View exemplar Basepair signature: cWW-cWH-cHW-F-cWH-cHW-F-F-tHH-cWH-tWW-cWH-F-tWW-cWH-F-cWH History status: Exact match	0	1
234	HL_47854.1 View exemplar Basepair signature: cWW-F-F-F-F History status: New id, 1 parent	0	1
235	HL_84847.1 View exemplar Basepair signature: cWW-F-F-F-F-tWW-F-F-F-F-F-F History status: Exact match	0	1
236	HL_98252.1 View exemplar Basepair signature: cWW-tWW-F-F-F-F History status: Exact match	0	1
237	HL_63355.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F-F-F-F-F-F History status: New id, 1 parent	0	1
238	HL_15118.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F-F-F-F History status: New id, 1 parent	0	1
239	HL_92488.1 View exemplar Basepair signature: cWW-cWW-F-cSS-F-F-F-F-F-F History status: Exact match	0	1
240	HL_85434.1 View exemplar Basepair signature: cWW-cWW-F-F-F-F-F-F History status: New id, 1 parent	0	1
241	HL_01763.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F-F History status: New id, 1 parent	0	1
242	HL_88558.1 View exemplar Basepair signature: cWW-tSH-F-F-F-F-F-F-F History status: New id, 1 parent	0	1
243	HL_04641.1 View exemplar Basepair signature: cWW-F-F-F-F-F History status: Exact match	0	1
244	HL_07903.1 View exemplar Basepair signature: cWW-cWW-F-F-F-F-F-F-F-F-F History status: New id, 1 parent	0	1
245	HL_20781.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F-F-F History status: New id, 1 parent	0	1
246	HL_35941.1 View exemplar Basepair signature: cWW-F History status: New id, 1 parent	0	1
247	HL_59564.1 View exemplar Basepair signature: cWW-F-cSS-F-cSS-F-F-F-F-F-F-F-F-F-F-F-F History status: Exact match	0	1
248	HL_85844.1 View exemplar Basepair signature: cWW-cWW-tWH-F-F-F-F-F History status: New id, 1 parent	0	1
249	HL_24079.1 View exemplar Basepair signature: cWW-F-F-F-F History status: New id, 1 parent	0	1
250	HL_56500.1 View exemplar Basepair signature: cWW-cWW-F-cSH-F-F History status: Exact match	0	1
251	HL_70103.1 View exemplar Basepair signature: cWW-F-F History status: New id, 1 parent	0	1
252	HL_85993.1 View exemplar Basepair signature: cWW-F-F-F-F-F History status: Exact match	0	1
253	HL_98928.1 View exemplar Basepair signature: cWW-F-F-F-F History status: New id, 1 parent	0	1
254	HL_53886.1 View exemplar Basepair signature: cWW-F-F-F History status: New id, 1 parent	0	1

Coloring options:
Nucleotide numbers

Exact match 60; New id, 1 parent 65; Updated, 2 parents 21; New id, 2 parents 48; New id, > 2 parents 48; Updated, 1 parent 10; New id, no parents 2;

Hairpin Loop Motif Atlas Release 3.89 Download CSV JSON annotations

Hairpin Loop Motif Atlas Release 3.89

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