Hairpin Loop Motif Atlas Release 3.89

#	Motif	Core Nts	Instances
1	HL_37824.1 View exemplar Basepair signature: cWW-F-F-F-F History status: New id, > 2 parents GNRA (333) GNRA variation (20) GNRA with GA tSW pair (4) GNRA related (2)	6	359
2	HL_43993.1 View exemplar Basepair signature: cWW-tWH-F-F-F-F-F History status: New id, > 2 parents T-loop with 2 stacked bulged bases (140) T-loop related (1)	9	141
3	HL_34617.1 View exemplar Basepair signature: cWW-tSW-F History status: New id, > 2 parents UNCG (55) UNCG variation (2)	5	57
4	HL_06059.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F-F History status: New id, > 2 parents tRNA anticodon loop (45) Anticodon loop related (6)	9	51
5	HL_43793.1 View exemplar Basepair signature: cWW-F History status: New id, > 2 parents Mini UNCG (42) Mini UNCG with extended bulge (2)	3	50
6	HL_93324.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F History status: New id, > 2 parents Pseudoknot geometry (26)	8	26
7	HL_77436.1 View exemplar Basepair signature: cWW-F-F-F-F-F History status: New id, > 2 parents T-loop related (9) tRNA anticodon loop with synthetase (3) T-loop with 1 bulged base (2) Other HL (2) tRNA anticodon loop (1) T-loop (1)	7	24
8	HL_71121.1 View exemplar Basepair signature: cWW-F History status: New id, > 2 parents Mini UNCG (2)	3	24
9	HL_48417.1 View exemplar Basepair signature: cWW-F-F History status: New id, > 2 parents tRNA anticodon loop with synthetase (1) tRNA D-loop (1)	4	23
10	HL_58705.1 View exemplar Basepair signature: cWW-tWH-F-F-F History status: New id, > 2 parents T-loop with 2 bulged bases not stacked (11) T-loop with 2 stacked bulged bases (8) T-loop related (2) T-loop with 1 bulged base (2)	7	23
11	HL_33074.2 View exemplar Basepair signature: cWW-F-F-F-cWW-F-F-F History status: Updated, 2 parents U1 small nuclear ribonucleoprotein A binding hairpin (22)	10	22
12	HL_22584.3 View exemplar Basepair signature: cWW-tWS-cWW-F History status: Updated, 1 parent Fab BL3-6 binding hairpin with tSW (19) Other HL (3)	5	22
13	HL_82182.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F History status: New id, > 2 parents GNRA related (6) GNRA with extra cWW (5) GNRA with extra near cWW (4) tRNA anticodon loop (2) T-loop related (1) GNRA with extra cWH (1)	8	21
14	HL_64188.1 View exemplar Basepair signature: cWW-F-F-F-F-F History status: New id, > 2 parents Purine riboswitch (7) tRNA anticodon loop (4) Anticodon loop related (2) GNRA related (2) Pseudoknot geometry (2)	7	18
15	HL_20811.1 View exemplar Basepair signature: cWW-cWS-F History status: New id, > 2 parents tRNA D-loop (17) Other HL (1)	5	18
16	HL_56334.1 View exemplar Basepair signature: cWW-F History status: New id, > 2 parents Mini UNCG (14) Mini UNCG related (2)	3	16
17	HL_08002.12 View exemplar Basepair signature: cWW-cWW-F-tWH History status: Updated, 2 parents T-loop with unstacked turn (15) T-loop with 2 stacked bulged bases (1)	6	16
18	HL_27115.1 View exemplar Basepair signature: cWW-tSH-F-F-F-F History status: New id, > 2 parents GNRA wlth tandem sheared (12) Anticodon loop related (2) GNRA wlth extra near cWW (1)	8	16
19	HL_30680.1 View exemplar Basepair signature: cWW-F-F-F-F-F History status: New id, > 2 parents Pseudoknot geometry (15)	7	15
20	HL_36430.1 View exemplar Basepair signature: cWW-F-F-F-F History status: New id, > 2 parents GNRA (1)	6	15
21	HL_75293.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F-F-F History status: New id, > 2 parents	10	15
22	HL_99538.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F History status: New id, > 2 parents	8	14
23	HL_40756.1 View exemplar Basepair signature: cWW-F-F-F History status: New id, 2 parents Pseudoknot geometry with 3' bulge (14)	5	14
24	HL_56357.1 View exemplar Basepair signature: cWW-F-F-F History status: New id, 2 parents	5	13
25	HL_49922.1 View exemplar Basepair signature: cWW-F-F-F History status: New id, 2 parents	5	12
26	HL_79150.1 View exemplar Basepair signature: cWW-F-F-F-F-F History status: New id, > 2 parents GNRA variation (4) tRNA anticodon loop (1) Pseudoknot geometry (1)	7	12
27	HL_22523.1 View exemplar Basepair signature: cWW-F-F-F History status: New id, > 2 parents UNCG variation (3)	5	12
28	HL_65794.1 View exemplar Basepair signature: cWW-F-F-F-F History status: New id, 2 parents Ribsomal LSU H95 (6) Pseudoknot geometry (5)	6	11
29	HL_73266.7 View exemplar Basepair signature: cWW-cWW-cSW-cSH-F-F-F History status: Updated, 2 parents	9	11
30	HL_66853.5 View exemplar Basepair signature: cWW-cWW-cHS-cWS History status: Updated, 2 parents tRNA D-loop (3)	7	11
31	HL_47383.2 View exemplar Basepair signature: cWW-F-F-cWW-F-F History status: Updated, 2 parents	8	11
32	HL_04783.1 View exemplar Basepair signature: cWW-F-F-F History status: New id, > 2 parents GNRA related (3)	5	10
33	HL_15076.1 View exemplar Basepair signature: cWW-F-F-F-F-F History status: New id, > 2 parents Pseudoknot geometry (7)	7	10
34	HL_64690.4 View exemplar Basepair signature: cWW-cSW-F-F-F-cWW History status: Updated, 2 parents	8	9
35	HL_78347.2 View exemplar Basepair signature: cWW-cWW-F-F History status: Updated, 1 parent	6	9
36	HL_67216.9 View exemplar Basepair signature: cWW-cWW-F-tSH History status: Updated, 2 parents GNRA (1)	7	9
37	HL_86929.1 View exemplar Basepair signature: cWW-F History status: New id, > 2 parents	3	9
38	HL_52953.1 View exemplar Basepair signature: cWW-F-F-F-F History status: New id, > 2 parents	6	8
39	HL_04171.6 View exemplar Basepair signature: cWW-cWW-F-F-F-F-F-F History status: Exact match	10	8
40	HL_56817.1 View exemplar Basepair signature: cWW-F-F-F History status: New id, 2 parents	5	8
41	HL_25222.2 View exemplar Basepair signature: cWW-cWW-F-F-cWW-F-F-F-F-F-F History status: Updated, 2 parents	13	8
42	HL_36684.3 View exemplar Basepair signature: cWW-F-F-F-F-cWW-F-F-F History status: Updated, 2 parents	11	8
43	HL_83767.2 View exemplar Basepair signature: cWW-F-F History status: Exact match	6	8
44	HL_19870.9 View exemplar Basepair signature: cWW-tHH-cWW-tHS-F-F-tWW History status: Updated, 2 parents	11	8
45	HL_67407.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F-F-F History status: New id, 2 parents	10	8
46	HL_23696.1 View exemplar Basepair signature: cWW-F-F History status: New id, > 2 parents UNCG variation (1)	4	8
47	HL_35677.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F-F History status: New id, > 2 parents Pseudoknot with intercalation (3)	9	7
48	HL_23827.2 View exemplar Basepair signature: cWW-cWW-F-F-F-F-F History status: Updated, 2 parents	8	7
49	HL_82661.1 View exemplar Basepair signature: cWW-tSH-F-F-F-F-F History status: New id, 1 parent	9	7
50	HL_93616.1 View exemplar Basepair signature: cWW-cWS-F-F-F-F History status: New id, 1 parent tRNA D-loop (7)	8	7
51	HL_39334.8 View exemplar Basepair signature: cWW-cWS-tSW-F-F History status: Exact match	7	7
52	HL_56677.9 View exemplar Basepair signature: cWW-tWH-cWH-tSH-tHW-tHW-tSW History status: Updated, 1 parent	13	7
53	HL_40252.2 View exemplar Basepair signature: cWW-cWS-tHS-F History status: Updated, 2 parents	7	7
54	HL_44398.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F History status: New id, 1 parent	8	7
55	HL_32617.8 View exemplar Basepair signature: cWW-F-F-F History status: Updated, 2 parents tRNA D-loop (5) Other HL (1)	5	7
56	HL_90642.8 View exemplar Basepair signature: cWW-tWH-F-F-F History status: Updated, 1 parent	7	7
57	HL_13963.1 View exemplar Basepair signature: cWW-F-F History status: New id, > 2 parents	4	7
58	HL_87954.1 View exemplar Basepair signature: cWW-tSW-F History status: New id, 2 parents	5	7
59	HL_20743.5 View exemplar Basepair signature: cWW-cWW-F-F-F-F History status: Updated, 2 parents	8	7
60	HL_72777.1 View exemplar Basepair signature: cWW-F-cWH-F-F-F-F History status: Exact match	9	6
61	HL_43613.6 View exemplar Basepair signature: cWW-tWH-tWH-F History status: Exact match	7	6
62	HL_24596.1 View exemplar Basepair signature: cWW-F-F-F History status: New id, > 2 parents	5	6
63	HL_83003.1 View exemplar Basepair signature: cWW-cWW-F-F-F History status: New id, > 2 parents	7	6
64	HL_19210.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F-F-F History status: New id, 2 parents	10	6
65	HL_83632.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F History status: New id, > 2 parents tRNA anticodon loop (6)	8	6
66	HL_55195.2 View exemplar Basepair signature: cWW-F History status: Updated, 2 parents	3	6
67	HL_61933.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F-F-F History status: New id, 1 parent Pseudoknot with intercalation (6)	10	6
68	HL_14199.2 View exemplar Basepair signature: cWW-tHS-cWW-F-F-F History status: Updated, 1 parent	9	6
69	HL_84570.1 View exemplar Basepair signature: cWW-cWW-F History status: New id, > 2 parents UNCG variation (1)	5	6
70	HL_97756.1 View exemplar Basepair signature: cWW-cSH-cWS-tSW-cSW-cWW-F-F-F-F History status: Exact match	14	6
71	HL_56131.1 View exemplar Basepair signature: cWW-F-F History status: New id, > 2 parents	4	6
72	HL_59342.2 View exemplar Basepair signature: cWW-F-F-F-F-cWW-F-F History status: Updated, 2 parents	10	5
73	HL_09967.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F History status: New id, 2 parents tRNA anticodon loop (2) Anticodon loop related (2) Pseudoknot geometry (1)	8	5
74	HL_89881.2 View exemplar Basepair signature: cWW-tHW-F-F-F-F-F-F History status: Exact match	10	5
75	HL_54152.1 View exemplar Basepair signature: cWW-F-F History status: New id, > 2 parents	4	5
76	HL_45175.1 View exemplar Basepair signature: cWW-cWS-F-F History status: New id, > 2 parents tRNA D-loop (5)	6	5
77	HL_86769.4 View exemplar Basepair signature: cWW-cWW-cSH-F History status: Updated, 2 parents	7	5
78	HL_41019.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F-F-F History status: New id, > 2 parents Anticodon loop related (2)	10	5
79	HL_99769.1 View exemplar Basepair signature: cWW-cWW-F-F-F-F History status: New id, > 2 parents	8	5
80	HL_50779.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F-F History status: Exact match	9	5
81	HL_06226.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F-F-F History status: New id, 2 parents	10	5
82	HL_20554.1 View exemplar Basepair signature: cWW-tWH-F-F History status: New id, 2 parents GNRA-like with tWH (2)	6	5
83	HL_38649.1 View exemplar Basepair signature: cWW-tSH-F-F-F-F-F-F History status: New id, > 2 parents	10	5
84	HL_98864.1 View exemplar Basepair signature: cWW-tWH-F-F-F-F-F-F History status: New id, 1 parent T-loop with unstacked turn (4)	10	4
85	HL_38808.1 View exemplar Basepair signature: cWW-cWW History status: New id, 2 parents	4	4
86	HL_01927.1 View exemplar Basepair signature: cWW-F-F-F-F-F History status: Exact match	7	4
87	HL_89199.1 View exemplar Basepair signature: cWW-F-F-F History status: New id, 1 parent Mini UNCG (4)	5	4
88	HL_07951.1 View exemplar Basepair signature: cWW-F-F History status: New id, > 2 parents tRNA D-loop (3)	4	4
89	HL_82710.1 View exemplar Basepair signature: cWW-F-F-F History status: New id, 2 parents	5	4
90	HL_49941.1 View exemplar Basepair signature: cWW-F-F-F-F-F History status: New id, > 2 parents tRNA D-loop (4)	7	4
91	HL_53971.1 View exemplar Basepair signature: cWW-F-F-F-F-F History status: New id, 2 parents	7	4
92	HL_73450.1 View exemplar Basepair signature: cWW-F-F History status: New id, 2 parents	4	4
93	HL_05475.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F History status: New id, 2 parents Pseudoknot (2)	8	4
94	HL_96426.1 View exemplar Basepair signature: cWW-F History status: New id, > 2 parents Externally structured (2)	3	4
95	HL_50537.6 View exemplar Basepair signature: cWW-F-F-F History status: Updated, 2 parents tRNA anticodon loop with synthetase (3) Other HL (1)	5	4
96	HL_86877.1 View exemplar Basepair signature: cWW-cSH-F-F-F-F-F-F History status: Exact match	9	4
97	HL_02887.1 View exemplar Basepair signature: cWW-tWH-F-F-F-F-F-F History status: New id, 2 parents T-loop with 3 stacked bulged bases (3)	10	4
98	HL_26777.1 View exemplar Basepair signature: cWW-tWH-tWH-F-F History status: New id, 1 parent T-loop related (4)	8	4
99	HL_80922.1 View exemplar Basepair signature: cWW-F-F-F History status: New id, > 2 parents	5	4
100	HL_81100.1 View exemplar Basepair signature: cWW History status: New id, > 2 parents	2	4
101	HL_91015.1 View exemplar Basepair signature: cWW-cWH-F History status: New id, 1 parent UNCG variation (2)	5	4
102	HL_42046.1 View exemplar Basepair signature: cWW-tSS-F-F-F History status: New id, 1 parent	7	4
103	HL_55436.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F-F-F History status: New id, 2 parents Pseudoknot geometry (1)	10	4
104	HL_84702.1 View exemplar Basepair signature: cWW-F-F-tHW-F-F-F-F History status: Exact match	10	4
105	HL_09260.1 View exemplar Basepair signature: cWW-F-F-F-F History status: New id, > 2 parents tRNA D-loop (3)	6	4
106	HL_09452.1 View exemplar Basepair signature: cWW-F-F-F History status: New id, > 2 parents tRNA D-loop (1)	5	3
107	HL_88364.1 View exemplar Basepair signature: cWW-cWW-F-F-F-F-F-F-F-F-F-F-F History status: New id, 2 parents Pseudoknot geometry (1)	15	3
108	HL_29129.1 View exemplar Basepair signature: cWW-tWH-F-F-F-F History status: New id, 2 parents	8	3
109	HL_68572.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F-F History status: New id, 2 parents	9	3
110	HL_07480.1 View exemplar Basepair signature: cWW-tSH-F-F-F History status: New id, 1 parent	7	3
111	HL_20751.2 View exemplar Basepair signature: cWW-tHW-F-F-F-F-F-F-F-F-F History status: Exact match	13	3
112	HL_68767.1 View exemplar Basepair signature: cWW-cWS-tSH-cWS-F History status: New id, 1 parent tRNA D-loop (3)	8	3
113	HL_49821.1 View exemplar Basepair signature: cWW-F-F-F-F-F History status: New id, 2 parents	7	3
114	HL_53504.2 View exemplar Basepair signature: cWW-cWW-tSH-F-F-F-F-F History status: Updated, 2 parents	10	3
115	HL_04642.1 View exemplar Basepair signature: cWW-F-F-F-F-F History status: New id, > 2 parents tRNA D-loop (3)	7	3
116	HL_73247.1 View exemplar Basepair signature: cWW-F-tWH-F-F-F-F-F-F-F-F-F-F History status: Exact match Pseudoknot geometry (3)	15	3
117	HL_02373.2 View exemplar Basepair signature: cWW-cWW-F-F-F-F-F-F-F-F-F-F-F History status: Updated, 2 parents	14	3
118	HL_12758.2 View exemplar Basepair signature: cWW-tSH-F-cHW-cWH-F-F-tSH-cWH-cHW-cWH-cHW-cWH-cWH-cHW-tSH-cHW-cWH-F-cWH History status: Exact match G-quadruplex (3)	22	3
119	HL_31581.6 View exemplar Basepair signature: cWW-cHS-F-F-F-cWW-F-F-F History status: Updated, 2 parents	11	3
120	HL_94376.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F-F-F-F History status: New id, 2 parents Pseudoknot geometry (2)	11	3
121	HL_50142.3 View exemplar Basepair signature: cWW-cWW-F-F-F History status: Updated, 1 parent GNRA variation (1)	6	3
122	HL_86109.1 View exemplar Basepair signature: cWW-F-tWH-F-F-F-F-F-F-F History status: Exact match	12	3
123	HL_19598.1 View exemplar Basepair signature: cWW-F-F-F History status: New id, 2 parents	5	3
124	HL_90774.1 View exemplar Basepair signature: cWW-F-F-F History status: New id, 2 parents	5	3
125	HL_83808.2 View exemplar Basepair signature: cWW-tWW-cWW-F-F History status: Updated, 1 parent Pseudoknot (3)	7	3
126	HL_96927.1 View exemplar Basepair signature: cWW-F-F-F-F History status: New id, > 2 parents	6	3
127	HL_75033.1 View exemplar Basepair signature: cWW-cWW-F-F-F History status: New id, 2 parents	7	3
128	HL_03273.1 View exemplar Basepair signature: cWW-F-F-tWH-F-F-F History status: New id, 2 parents	9	3
129	HL_67667.2 View exemplar Basepair signature: cWW-F-F History status: Exact match	4	3
130	HL_81205.2 View exemplar Basepair signature: cWW-cWW-tWH-F-tWH-F-F-F-F-F History status: Exact match	14	3
131	HL_91503.6 View exemplar Basepair signature: cWW-cWW-F-F-F-F-F-F History status: Updated, 1 parent	9	3
132	HL_34636.1 View exemplar Basepair signature: cWW-cWW-F-F-F-F-F History status: New id, 2 parents	9	3
133	HL_07372.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F-F-F History status: New id, > 2 parents	10	3
134	HL_01226.2 View exemplar Basepair signature: cWW-F-F-F-F-F History status: Exact match	7	2
135	HL_23713.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F-F History status: New id, 1 parent	9	2
136	HL_38701.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F-F-F History status: New id, 1 parent	10	2
137	HL_76390.1 View exemplar Basepair signature: cWW-F-F-F History status: New id, 2 parents Mini UNCG related (1)	4	2
138	HL_43517.1 View exemplar Basepair signature: cWW-F-F-F History status: New id, 2 parents Mini UNCG (1)	5	2
139	HL_81954.1 View exemplar Basepair signature: cWW-F-F-F-F History status: New id, 2 parents	6	2
140	HL_53099.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F-F-F History status: New id, 2 parents	10	2
141	HL_15574.1 View exemplar Basepair signature: cWW-F-F-F-F-F History status: New id, 2 parents	7	2
142	HL_29735.1 View exemplar Basepair signature: cWW-F-F-F-F History status: New id, 2 parents	6	2
143	HL_73183.1 View exemplar Basepair signature: cWW-tSH-tHW-F-F-F-F-F-F-F-F-F History status: Exact match Pseudoknot geometry with G-bulge (2)	15	2
144	HL_98870.1 View exemplar Basepair signature: cWW-tSH-tWW-F-F-F-F-F History status: Exact match	11	2
145	HL_10456.1 View exemplar Basepair signature: cWW-F-cWW-tWW-F-tHW-F-F-F-F-F-F-F History status: Exact match	17	2
146	HL_39243.1 View exemplar Basepair signature: cWW-F-F-F-F History status: New id, 2 parents	6	2
147	HL_16398.1 View exemplar Basepair signature: cWW-F-F-F-F-tSW-F History status: New id, 2 parents	11	2
148	HL_36335.1 View exemplar Basepair signature: cWW-F-F-cSS-cSS-F History status: New id, 1 parent	9	2
149	HL_59735.3 View exemplar Basepair signature: cWW-F-F-F-F-F History status: Updated, 1 parent	7	2
150	HL_10540.1 View exemplar Basepair signature: cWW-F-F-F-F-F History status: New id, 2 parents	7	2
151	HL_65110.1 View exemplar Basepair signature: cWW-tSH-F-F History status: New id, 2 parents	6	2
152	HL_78940.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F-F-F-F History status: New id, 2 parents	11	2
153	HL_89457.1 View exemplar Basepair signature: cWW-F-F-F History status: New id, 2 parents	5	2
154	HL_04725.1 View exemplar Basepair signature: cWW-cWS-cWW-cWW-cWS History status: Exact match	8	2
155	HL_21372.1 View exemplar Basepair signature: cWW-F-cSH-F-F History status: Exact match	7	2
156	HL_60293.1 View exemplar Basepair signature: cWW-cWH-F-cWH-cHW-cHW-cWH-cHW-cWH-F-cWH-cWH-cWH-F History status: Exact match G-quadruplex (2)	18	2
157	HL_73255.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F History status: Exact match	8	2
158	HL_86012.1 View exemplar Basepair signature: cWW-tWH-F-F-F-F History status: New id, 1 parent T-loop with unstacked turn (2)	8	2
159	HL_08128.1 View exemplar Basepair signature: cWW-F-F-F-F History status: New id, 1 parent Mini UNCG with extended bulge (2)	7	2
160	HL_36540.1 View exemplar Basepair signature: cWW-F-F-F-F History status: New id, 1 parent	6	2
161	HL_02581.1 View exemplar Basepair signature: cWW-tSH-cWS-tSW-F-F-F History status: New id, 1 parent tRNA D-loop (2)	11	2
162	HL_90620.1 View exemplar Basepair signature: cWW-F-F-F-F-cSW-cSH-F History status: Exact match	11	2
163	HL_05206.1 View exemplar Basepair signature: cWW-F-F History status: New id, 2 parents	4	2
164	HL_96417.1 View exemplar Basepair signature: cWW-F-F-F History status: New id, 2 parents	5	2
165	HL_08510.1 View exemplar Basepair signature: cWW-F-F-cSH-F-F History status: Exact match	8	2
166	HL_21414.1 View exemplar Basepair signature: cWW-F-F-F History status: New id, 1 parent	6	2
167	HL_13577.1 View exemplar Basepair signature: cWW-F-F-F-F History status: New id, 2 parents	6	2
168	HL_26631.1 View exemplar Basepair signature: cWW-F-F-F History status: New id, 1 parent	5	2
169	HL_45177.2 View exemplar Basepair signature: cWW-cWW-F-F History status: Updated, 1 parent	5	2
170	HL_08513.1 View exemplar Basepair signature: cWW-tSH-tSS-tHS-F-F-F-F-F-F-F-F-F-F-F History status: Exact match	18	2
171	HL_45785.1 View exemplar Basepair signature: cWW-F-F-F-F-cSH-F-F History status: Exact match	11	2
172	HL_57863.1 View exemplar Basepair signature: cWW-F-F-cWH-cWH-F History status: Exact match G-quadruplex fragment (2)	9	2
173	HL_70802.1 View exemplar Basepair signature: cWW-cWS-F History status: New id, 1 parent UNCG related (1)	5	2
174	HL_08554.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F History status: New id, 2 parents	17	2
175	HL_74379.1 View exemplar Basepair signature: cWW-F-F-cSS-cSS-F-F-F History status: New id, 1 parent	11	2
176	HL_41725.1 View exemplar Basepair signature: cWW-F-F-F-F-F History status: New id, 2 parents	7	2
177	HL_55305.1 View exemplar Basepair signature: cWW-F-F-F-F-F History status: Exact match	7	2
178	HL_19906.1 View exemplar Basepair signature: cWW-F-F-F-F History status: New id, 2 parents	7	2
179	HL_47732.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F History status: New id, 1 parent	8	2
180	HL_62934.1 View exemplar Basepair signature: cWW-tSH-F History status: New id, 2 parents	6	2
181	HL_03333.1 View exemplar Basepair signature: cWW-F-F-F-cSH-F History status: Exact match	8	2
182	HL_68499.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F-F-F History status: New id, 2 parents	10	2
183	HL_81622.1 View exemplar Basepair signature: cWW-cWS-F-tSW-F-tSH-tSH-cWW-F-F History status: Exact match	14	2
184	HL_72714.3 View exemplar Basepair signature: cWW-cWW-cWH-F-F-F-F-F History status: Exact match	11	2
185	HL_63355.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F-F-F-F-F-F History status: New id, 1 parent	13	1
186	HL_15118.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F-F-F-F History status: New id, 1 parent	11	1
187	HL_92488.1 View exemplar Basepair signature: cWW-cWW-F-cSS-F-F-F-F-F-F History status: Exact match	13	1
188	HL_85434.1 View exemplar Basepair signature: cWW-cWW-F-F-F-F-F-F History status: New id, 1 parent	10	1
189	HL_01763.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F-F History status: New id, 1 parent	9	1
190	HL_88558.1 View exemplar Basepair signature: cWW-tSH-F-F-F-F-F-F-F History status: New id, 1 parent	11	1
191	HL_04641.1 View exemplar Basepair signature: cWW-F-F-F-F-F History status: Exact match	7	1
192	HL_07903.1 View exemplar Basepair signature: cWW-cWW-F-F-F-F-F-F-F-F-F History status: New id, 1 parent	13	1
193	HL_20781.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F-F-F History status: New id, 1 parent	10	1
194	HL_35941.1 View exemplar Basepair signature: cWW-F History status: New id, 1 parent	3	1
195	HL_59564.1 View exemplar Basepair signature: cWW-F-cSS-F-cSS-F-F-F-F-F-F-F-F-F-F-F-F History status: Exact match	20	1
196	HL_85844.1 View exemplar Basepair signature: cWW-cWW-tWH-F-F-F-F-F History status: New id, 1 parent	11	1
197	HL_24079.1 View exemplar Basepair signature: cWW-F-F-F-F History status: New id, 1 parent	6	1
198	HL_56500.1 View exemplar Basepair signature: cWW-cWW-F-cSH-F-F History status: Exact match	9	1
199	HL_70103.1 View exemplar Basepair signature: cWW-F-F History status: New id, 1 parent	4	1
200	HL_85993.1 View exemplar Basepair signature: cWW-F-F-F-F-F History status: Exact match	7	1
201	HL_98928.1 View exemplar Basepair signature: cWW-F-F-F-F History status: New id, 1 parent	6	1
202	HL_53886.1 View exemplar Basepair signature: cWW-F-F-F History status: New id, 1 parent	5	1
203	HL_16991.1 View exemplar Basepair signature: cWW-cWH-cWH-F-cWH-F History status: Exact match G-quadruplex fragment (1)	8	1
204	HL_30839.1 View exemplar Basepair signature: F-F-F History status: New id, 1 parent	3	1
205	HL_70228.1 View exemplar Basepair signature: cWW-F-F-F-F-F History status: Exact match	5	1
206	HL_93652.1 View exemplar Basepair signature: cWW-F-F-F-F History status: New id, 1 parent	6	1
207	HL_99040.1 View exemplar Basepair signature: F-F-F-F-F-F History status: New id, 1 parent	6	1
208	HL_02483.1 View exemplar Basepair signature: cWW-tWH-F-cSH-F-F-F History status: Exact match	10	1
209	HL_24792.1 View exemplar Basepair signature: cWW-cWS-F-F-F History status: New id, 1 parent	6	1
210	HL_18423.1 View exemplar Basepair signature: cWW-tSH-tHS-F History status: New id, 1 parent	7	1
211	HL_70550.1 View exemplar Basepair signature: cWW-tSH-F-F-F-F History status: New id, 1 parent	8	1
212	HL_21400.1 View exemplar Basepair signature: cWW-tWH-tSW-cWW-cWH-cHW-cWH-cWH-cHW-cWH-cHW-cWH-cWH-cWH-cWH-cWH History status: Exact match G-quadruplex (1)	18	1
213	HL_60914.1 View exemplar Basepair signature: cWW-F History status: Exact match	3	1
214	HL_12870.1 View exemplar Basepair signature: cWW-tHW-F-F-F-F-F-F-F-F-F History status: Exact match	12	1
215	HL_66482.1 View exemplar Basepair signature: cWW-cWW-tWW-F-F-tWH-F-F-F-F-F-F-F-F History status: Exact match	18	1
216	HL_80362.1 View exemplar Basepair signature: cWW-F-F-F History status: New id, 1 parent	5	1
217	HL_56845.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F-F-F-F-F-F-F-F-F History status: Exact match	14	1
218	HL_70751.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F-F-F-F History status: New id, 1 parent	11	1
219	HL_50318.1 View exemplar Basepair signature: cWW-cSH-F-F History status: Exact match	6	1
220	HL_61202.1 View exemplar Basepair signature: cWW-F-F-F History status: New id, 1 parent GNRA related (1)	5	1
221	HL_99748.1 View exemplar Basepair signature: cWW-F-F-cSH History status: New id, 1 parent Other HL (1)	6	1
222	HL_02811.1 View exemplar Basepair signature: cWW-F-F History status: Exact match	4	1
223	HL_54801.1 View exemplar Basepair signature: cWW-cWW-F-F History status: New id, 1 parent	6	1
224	HL_80411.1 View exemplar Basepair signature: cWW-F-cSH-F-F-F-F History status: New id, 1 parent tRNA D-loop (1)	9	1
225	HL_57022.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F History status: New id, 1 parent Pseudoknot (1)	8	1
226	HL_70773.1 View exemplar Basepair signature: cWW-tSW-F-F History status: New id, 1 parent UNCG variation (1)	6	1
227	HL_22135.1 View exemplar Basepair signature: cWW-F-F History status: New id, 1 parent	4	1
228	HL_36790.1 View exemplar Basepair signature: F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F History status: Exact match	18	1
229	HL_61782.1 View exemplar Basepair signature: cWW-F-F-F-F-F History status: New id, 1 parent tRNA D-loop (1)	7	1
230	HL_74292.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F-F-F History status: New id, 1 parent	10	1
231	HL_41363.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F-F-F History status: New id, 1 parent	10	1
232	HL_33983.1 View exemplar Basepair signature: cWW-F-F-F-F-F History status: New id, no parents	7	1
233	HL_02966.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F History status: Exact match	37	1
234	HL_26934.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F History status: New id, 1 parent	8	1
235	HL_58224.1 View exemplar Basepair signature: cWW-F-F-F-F-F History status: Exact match	7	1
236	HL_97733.1 View exemplar Basepair signature: cWW-F-F-F-cSH-F History status: Exact match	8	1
237	HL_08602.1 View exemplar Basepair signature: cWW-cSS-F-cSS-F-F-F-F-F History status: Exact match	11	1
238	HL_38046.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F History status: New id, 1 parent	8	1
239	HL_50851.1 View exemplar Basepair signature: cWW-cWH-cWH-cWH-cWH-F History status: Exact match G-quadruplex fragment (1)	9	1
240	HL_62041.1 View exemplar Basepair signature: cWW-cWS History status: New id, 1 parent UNCG related (1)	4	1
241	HL_87463.1 View exemplar Basepair signature: cWW-cWW-F-F-F-F-F History status: New id, 1 parent	9	1
242	HL_14757.1 View exemplar Basepair signature: cWW-cWW-F-F-tSW-tWW-cWW-tHW-tSW-F-cWH-F History status: New id, no parents	17	1
243	HL_06301.1 View exemplar Basepair signature: F-F-F-F-F-F-F History status: New id, 1 parent	7	1
244	HL_58539.1 View exemplar Basepair signature: cWW-tWS-F-tHW-F-F-F-F-F-F-F-F History status: Exact match	13	1
245	HL_71925.1 View exemplar Basepair signature: F-F-F-F-F-F-F-F-F-F-F-F History status: New id, 1 parent	12	1
246	HL_00317.1 View exemplar Basepair signature: cWW-F-cSS-F-F-F-F-F-F-F-F-F-F-F-F-F-F History status: Exact match	19	1
247	HL_52463.1 View exemplar Basepair signature: cWW-F-F-F History status: New id, 1 parent	5	1
248	HL_28904.1 View exemplar Basepair signature: cWW-F-F-tWH-cWH-tSH-tHW-F-F-F-F-F History status: New id, 1 parent	16	1
249	HL_42545.1 View exemplar Basepair signature: cWW-F-F-F-F-cSW-cSH-F History status: New id, 1 parent	7	1
250	HL_91641.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F-F-F-cSW-F-F-F-F History status: New id, 1 parent	16	1
251	HL_35354.1 View exemplar Basepair signature: cWW-cWH-cHW-F-cWH-cHW-F-F-tHH-cWH-tWW-cWH-F-tWW-cWH-F-cWH History status: Exact match	21	1
252	HL_47854.1 View exemplar Basepair signature: cWW-F-F-F-F History status: New id, 1 parent	6	1
253	HL_84847.1 View exemplar Basepair signature: cWW-F-F-F-F-tWW-F-F-F-F-F-F History status: Exact match	14	1
254	HL_98252.1 View exemplar Basepair signature: cWW-tWW-F-F-F-F History status: Exact match	8	1

Coloring options:
Nucleotide numbers

Exact match 60; New id, 1 parent 65; Updated, 2 parents 21; New id, 2 parents 48; New id, > 2 parents 48; Updated, 1 parent 10; New id, no parents 2;

Hairpin Loop Motif Atlas Release 3.89 Download CSV JSON annotations

Hairpin Loop Motif Atlas Release 3.89

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