IL_14831.1

#S	Loop id	PDB	Disc	#Non-core	Annotation	Chain(s)	Standardized name		1		2	break		3		4	1-4	2-3
1	IL_387D_001	387D	0.6048	2	Multiple bulged bases	A	RNA Pseudoknot	G	15	A	18	*	U	1	C	2	cWW	cWW
2	IL_4KZD_006	4KZD	0.5130	2	Stack outside cWW	R	RNA (84-MER)	G	49	G	52	*	C	30	C	31	cWW	cWW
3	IL_4TS0_007	4TS0	0.4743	2		Y+X	Spinach RNA aptamer, bimolecular construct	G	60	G	63	*	C	33	C	34	cWW	cWW
4	IL_1XOK_002	1XOK	0.5177	2	Major groove intercalation	B+A	alfalfa mosaic virus RNA 3' UTR	G	877	G	880	*	C	868	C	869	cWW	cWW
5	IL_4P97_004	4P97	0.4391	1		D+C	RNA (11-mer)	G	38	G	40	*	C	12	C	13	cWW	cWW
6	IL_1XOK_001	1XOK	0.4216	2	Major groove intercalation	A	alfalfa mosaic virus RNA 3' UTR	A	864	G	867	*	C	846	U	847	cWW	cWW
7	IL_1ET4_010	1ET4	0.4134	1		E	RNA APTAMER, 35-MER	G	126	G	128	*	C	118	C	119	cWW	cWW
8	IL_3J9M_086	3J9M	0.5290	1	Single bulged A (H)	AA	SSU rRNA	U	1477	C	1479	*	G	1175	G	1176	cWW	cWW
9	IL_4IOA_067	4IOA	0.3579	2	Multiple bulged bases	X	LSU rRNA	U	1881	A	1884	*	U	1833	G	1834	cWW	cWW
10	IL_5FDU_109	5FDU	0.3043	1	Single bulged C (H)	1A	LSU rRNA	U	2888	C	2890	*	G	2848	G	2849	cWW	cWW
11	IL_3J9W_128	3J9W	0.2854	1	Single bulged A (H)	BA	LSU rRNA	U	1535	G	1537	*	C	1545	G	1546	cWW	cWW
12	IL_4V91_142	4V91	0.2895	1	Single bulged U (H)	1	LSU rRNA	U	3381	G	3383	*	C	3324	G	3325	cWW	cWW
13	IL_5AJ0_177	5AJ0	0.2407	1	Single bulged U (H)	A2	LSU rRNA	U	5011	G	5013	*	C	4954	G	4955	cWW	cWW
14	IL_4V88_378	4V88	0.2344	1	Single bulged U (H)	A5	LSU rRNA	U	3381	G	3383	*	C	3324	G	3325	cWW	cWW
15	IL_5FDU_063	5FDU	0.2106	1	Single bulged A (H)	1A	LSU rRNA	U	1535	G	1537	*	C	1545	G	1546	cWW	cWW
16	IL_2OZB_001	2OZB	0.4049	1	Single bulged A	C	RNA comprising the 5' Stem-Loop RNA of U4snRNA	U	24	G	26	*	C	47	G	48	cWW	cWW
17	IL_4U26_170	4U26	0.2958	1	Major groove intercalation (H)	BB	5S rRNA	U	65	G	67	*	C	17	G	18	cWW	cWW
18	IL_4YAZ_007	4YAZ	0.2469	2	Multiple bulged bases	R	Cyclic di-GMP-I riboswitch	U	47	G	50	*	C	68	G	69	cWW	cWW
19	IL_3J9W_005	3J9W	0.2105	2	Multiple bulged bases (H)	AA	SSU rRNA	C	65	G	68	*	C	101	G	102	cWW	cWW
20	IL_5J7L_302	5J7L	0.0000	1	Single bulged A	DA	LSU rRNA	C	1489	G	1491	*	C	1499	G	1500	cWW	cWW
21	IL_1FJG_005	1FJG	0.1611	2	Multiple bulged bases (H)	A	SSU rRNA	C	63	G	66	*	C	103	G	104	cWW	cWW
22	IL_4V4Q_182	4V4Q	0.1523	2	Multiple bulged bases (H)	CA	SSU rRNA	C	63	A	66	*	U	103	G	104	cWW	cWW
23	IL_4V9F_021	4V9F	0.1613	2	Multiple bulged bases	0	LSU rRNA	C	699	G	702	*	C	726	G	727	cWW	cWW
24	IL_4WFA_111	4WFA	0.2846	1	Major groove intercalation (H)	Y	5S rRNA	U	63	G	65	*	C	15	A	16	cWW	cWW
25	IL_4V8C_112	4V8C	0.2941	1	Major groove intercalation (H)	AB	5S rRNA	C	65	G	67	*	C	17	G	18	cWW	cWW
26	IL_1S72_099	1S72	0.2529	1	Major groove intercalation (H)	9	5S rRNA	C	64	G	66	*	C	15	G	16	cWW	cWW
27	IL_4YAZ_008	4YAZ	0.3445	2	Multiple bulged bases	R	Cyclic di-GMP-I riboswitch	C	64	C	67	*	G	51	G	52	cWW	cWW
28	IL_4V9F_041	4V9F	0.2050	1	Single bulged G	0	LSU rRNA	U	1136	G	1138	*	C	1225	G	1226	cWW	cWW
29	IL_4WZJ_034	4WZJ	0.2629	1		YYYY	U4 small nuclear RNA variant: Native sequence 85-145, of which nucleotides 97-104 are replaced with GAAA tetraloop and nucleotides 134-137 are replaced with GAAA tetraloop receptor.	U	25	G	27	*	C	3	G	4	cWW	cWW
30	IL_5J7L_331	5J7L	0.2721	1	Single bulged U	DA	LSU rRNA	U	2202	G	2204	*	U	2220	G	2221	cWW	cWW
31	IL_4V8P_365	4V8P	0.2275	1	Single bulged A (H)	F1	LSU rRNA	U	1424	G	1426	*	U	1437	A	1438	cWW	cWW
32	IL_3JAM_069	3JAM	0.3846	1		2	SSU rRNA	U	1368	G	1370	*	U	1352	G	1353	cWW	cWW
33	IL_4V91_066	4V91	0.4678	1	Single bulged A (H)	1	LSU rRNA	U	1398	G	1400	*	C	1411	G	1412	cWW	ncWW
34	IL_5AJ0_096	5AJ0	0.3857	1		A2	LSU rRNA	U	2291	G	2293	*	C	2304	G	2305	cWW	cWW
35	IL_3J7P_012	3J7P	0.4661	4		5	LSU rRNA	U	184	G	189	*	C	252	G	253	cWW	cWW
36	IL_5LJ3_009	5LJ3	0.4985	2		Z	U2 snRNA	C	1143	G	1146	*	C	1096	G	1097	cWW	cWW
37	IL_4V88_260	4V88	0.5333	1	Single bulged A (H)	A5	LSU rRNA	C	577	G	579	*	U	512	G	513	cWW	cWW
38	IL_3J7A_076	3J7A	0.6273	1		A	SSU rRNA	U	2035	A	2036	*	U	1953	G	1955	cWW	cWW
39	IL_5A2Q_085	5A2Q	0.6233	1		2	SSU rRNA	U	1812	A	1813	*	U	1720	G	1722	cWW	cWW
40	IL_3J7P_231	3J7P	0.6118	1		S2	SSU rRNA	U	1812	A	1813	*	U	1720	G	1722	cWW	cWW
41	IL_1KXK_003	1KXK	0.5034	2	Multiple bulged bases	A	ai5g group II Self-splicing intron	U	28	G	29	*	C	42	G	45	cWW	cWW
42	IL_4V88_304	4V88	0.5922	1	Single bulged A (H)	A5	LSU rRNA	C	1420	G	1421	*	C	1385	G	1387	cWW	cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
UAG*CG	6
UUG*CG	3
CAG*CG	3
UA*UUG	3
GUUG*CC	2
UUG*UG	2
GGAA*UC	1
GAUG*CC	1
GAG*CC	1
AAUG*CU	1
GUG*CC	1
UAC*GG	1
UGAA*UG	1
UCC*GG	1
UCG*CG	1
UAAG*CG	1
CGAG*CG	1
CGUG*CG	1
CGAA*UG	1
CAUG*CG	1
UAG*CA	1
CAGC*GG	1
UGG*CG	1
UUG*UA	1
UCGUGG*CG	1
CUUG*CG	1
CAG*UG	1
UG*CACG	1
CG*CAG	1

Non-Watson-Crick part of the motif

Sequence	Counts
A*	13
U*	7
GA*	4
UU*	3
AU*	3
*U	3
C*	2
AA*	1
GU*	1
AG*	1
G*	1
CGUG*	1
*AC	1
*A	1

Release history

Release	2.0
Date	2017-04-24
Status	New id, > 2 parents

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Motif IL_14831.1 Version IL_14831.1 of this group appears in releases 2.0 to 2.0 Download Csv Json

3D structures

Complete motif including flanking bases

Non-Watson-Crick part of the motif

Release history

Parent motifs

Children motifs

Motif IL_14831.1 Version IL_14831.1 of this group appears in releases 2.0 to 2.0

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Csv

Json