IL_1XOK_002

3D structure

PDB id

1XOK (explore in PDB, NAKB, or RNA 3D Hub)

Description

crystal structure of alfalfa mosaic virus RNA 3'UTR in complex with coat protein N terminal peptide

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CC*GAUG

Length

6 nucleotides

Bulged bases

1XOK|1|B|U|879

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

Major groove intercalation

Broad Annotation

Major groove intercalation

Motif group

IL_66635.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

26

Unit IDs

1XOK|1|A|C|868
1XOK|1|A|C|869
*
1XOK|1|B|G|877
1XOK|1|B|A|878
1XOK|1|B|U|879
1XOK|1|B|G|880

Current chains

Chain A

alfalfa mosaic virus RNA 3' UTR

Chain B

alfalfa mosaic virus RNA 3' UTR

Nearby chains

Chain D

Coat protein