Motif IL_21744.1 Version IL_21744.1 of this group appears in releases 2.0 to 2.0
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | break | 6 | 7 | 1-7 | 3-5 | 3-6 | 4-6 | 5-6 | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_3J7A_046 | 3J7A | 0.1964 | 0 | A | SSU rRNA | G | 1054 | G | 1055 | G | 1056 | A | 1057 | G | 1058 | * | U | 1084 | C | 1085 | cWW | ntSH | cWW | |||
| 2 | IL_4V4Q_216 | 4V4Q | 0.0828 | 0 | CA | SSU rRNA | G | 774 | G | 775 | G | 776 | A | 777 | G | 778 | * | U | 804 | C | 805 | cWW | cWW | ||||
| 3 | IL_1FJG_032 | 1FJG | 0.0000 | 0 | A | SSU rRNA | G | 774 | G | 775 | G | 776 | A | 777 | G | 778 | * | U | 804 | C | 805 | cWW | ntHS | cWW | |||
| 4 | IL_3J9W_031 | 3J9W | 0.0826 | 0 | AA | SSU rRNA | G | 783 | G | 784 | G | 785 | A | 786 | G | 787 | * | U | 813 | C | 814 | cWW | cWW | ||||
| 5 | IL_5AJ3_021 | 5AJ3 | 0.2984 | 0 | A | SSU rRNA | G | 414 | A | 415 | C | 416 | C | 417 | C | 418 | * | G | 444 | C | 445 | cWW | ncSH | cWW | |||
| 6 | IL_3J9M_082 | 3J9M | 0.3173 | 0 | AA | SSU rRNA | G | 1062 | A | 1063 | C | 1064 | C | 1065 | C | 1066 | * | G | 1092 | C | 1093 | cWW | cWW | ||||
| 7 | IL_2PN4_007 | 2PN4 | 0.7242 | 2 | C+D | RNA (24-mer) + RNA (20-mer) | G | 52 | A | 53 | A | 54 | A | 57 | C | 58 | * | G | 110 | C | 111 | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GGGAG*UC | 4 |
| GACCC*GC | 2 |
| GAACUAC*GC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GGA* | 4 |
| ACC* | 2 |
| AACUA* | 1 |
Release history
| Release | 2.0 |
|---|---|
| Date | 2017-04-24 |
| Status | New id, 2 parents |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
- Basepair signature
- cWW-L-L-L-cWW
- Heat map statistics
- Min 0.08 | Avg 0.32 | Max 0.73
Coloring options: