Motif IL_33886.1 Version IL_33886.1 of this group appears in releases 3.88 to 3.88
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | break | 7 | 8 | 9 | 10 | 11 | 1-11 | 4-9 | 5-8 | 5-10 | 6-7 | 8-10 | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_4V9F_108 | 4V9F | 0.0000 | 1 | Kink-turn with embedded cWW pair | 0 | LSU rRNA | C | 260 | A | 261 | A | 262 | G | 264 | U | 265 | G | 266 | * | C | 245 | G | 246 | A | 247 | A | 248 | G | 249 | cWW | tSH | tHS | cWW | cWW | |
| 2 | IL_1NTA_006 | 1NTA | 0.6760 | 1 | Kink-turn with embedded cWW pair | B+A | RNA (18-mer) | A | 105 | C | 106 | C | 107 | A | 108 | G | 110 | G | 111 | * | C | 15 | U | 16 | U | 17 | C | 18 | U | 19 | cWW | ntHW | cWW | cWW | ncSH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CAAUGUG*CGAAG | 1 |
| ACCACGG*CUUCU | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AAUGU*GAA | 1 |
| CCACG*UUC | 1 |
Release history
| Release | 3.88 |
|---|---|
| Date | 2024-09-11 |
| Status | New id, no parents |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- Kink-turn with embedded cWW pair (2)
- Basepair signature
- cWW-L-cWW-L-R-L-R-cWW
- Heat map statistics
- Min 0.68 | Avg 0.34 | Max 0.68
Coloring options: