Motif IL_45808.1 Version IL_45808.1 of this group appears in releases 0.7 to 0.8
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | break | 5 | 6 | 7 | 8 | 1-8 | 2-7 | 3-6 | 4-5 | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_4A1B_097 | 4A1B | 0.7549 | 1 | 1 | 26S RRNA | U | 2418 | A | 2419 | G | 2420 | U | 2421 | * | G | 2592 | G | 2593 | G | 2594 | G | 2596 | cWW | tHS | tHS | cWW | |
| 2 | IL_3V2F_043 | 3V2F | 0.0000 | 1 | A | 23S Ribosomal RNA | U | 1240 | A | 1241 | A | 1242 | G | 1243 | * | C | 1202 | G | 1203 | A | 1204 | G | 1206 | cWW | tHS | cWW | ||
| 3 | IL_3V2F_026 | 3V2F | 0.8276 | 1 | A | 23S Ribosomal RNA | C | 846 | G | 848 | A | 849 | C | 850 | * | G | 927 | G | 928 | U | 930 | G | 931 | cWW | tHS | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UAGU*GGGGG | 1 |
| CGAUG*UAAG | 1 |
| CUGAC*GGUG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AG*GGG | 1 |
| GAU*AA | 1 |
| UGA*GU | 1 |
Release history
Parent motifs
| Parent motif | Common motif instances | Only in IL_45808.1 | Only in the parent motif |
|---|---|---|---|
| IL_14225.1 Compare | IL_4A1B_097 | IL_3V2F_026, IL_3V2F_043 |
Children motifs
| Child motif | Common motif instances | Only in IL_45808.1 | Only in the child motif |
|---|---|---|---|
| IL_70550.1 Compare | IL_4A1B_097 | IL_3V2F_026, IL_3V2F_043 | |
| IL_86826.1 Compare | IL_3V2F_043 | IL_4A1B_097, IL_3V2F_026 | IL_2QBG_057, IL_3BNQ_005 |
| IL_93782.1 Compare | IL_3V2F_026 | IL_4A1B_097, IL_3V2F_043 | IL_4A1B_029 |
- Annotations
- Basepair signature
- cWW-L-R-tHS-cWW
- Heat map statistics
- Min 0.75 | Avg 0.54 | Max 0.85
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