Motif IL_93782.1 Version IL_93782.1 of this group appears in releases 0.9 to 0.10

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Chain(s)	Standardized name		1		2		3		4		5	break		6		7		8		9	1-9	2-8	4-7	5-6
1	IL_4A1B_029	4A1B	0.0000	1	1	26S RRNA	G	704	A	705	U	706	A	707	G	708	*	C	721	G	722	C	724	C	725	cWW	tHW	tHS	cWW
2	IL_3V2F_026	3V2F	0.9286	0	A	23S Ribosomal RNA	C	846	U	847	G	848	A	849	C	850	*	G	927	G	928	U	930	G	931	cWW		tHS	cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
GAUAG*CGUCC	1
CUGAC*GGUG	1

Non-Watson-Crick part of the motif

Sequence	Counts
AUA*GUC	1
UGA*GU	1

Release history

Release	0.9	0.10
Date	2013-02-17	2013-02-17
Status	New id, 2 parents	Exact match

Parent motifs

Parent motif	Common motif instances	Only in IL_93782.1	Only in the parent motif
IL_45808.1 Compare	IL_3V2F_026	IL_4A1B_029	IL_4A1B_097, IL_3V2F_043
IL_91026.1 Compare	IL_4A1B_029	IL_3V2F_026	IL_4A1B_075

Children motifs

Child motif	Common motif instances	Only in IL_93782.1	Only in the child motif
IL_58811.1 Compare	IL_4A1B_029	IL_3V2F_026	IL_4A1B_075
IL_91547.1 Compare	IL_3V2F_026	IL_4A1B_029	IL_4A1B_097, IL_3V2F_043

Annotations: (2)
Basepair signature: cWW-L-R-L-tHS-cWW
Heat map statistics: Min 0.93 | Avg 0.46 | Max 0.93

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