Motif IL_86357.6 Version IL_86357.6 of this group appears in releases 1.17 to 1.17
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | break | 4 | 5 | 6 | 1-6 | 2-5 | 3-4 | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_1VWW_110 | 1VWW | 0.2432 | 9 | 5 | 28S ribosomal RNA | A | 2844 | A | 2845 | G | 2846 | * | C | 3842 | C | 3843 | U | 3844 | cWW | ntWW | cWW | |
| 2 | IL_4A1B_079 | 4A1B | 0.1233 | 0 | 1 | 26S RRNA | A | 1919 | A | 1920 | G | 1921 | * | C | 2333 | C | 2334 | U | 2335 | cWW | tWW | cWW | |
| 3 | IL_1VX6_084 | 1VX6 | 0.0800 | 0 | A | 28S ribosomal RNA | A | 2163 | A | 2164 | G | 2165 | * | C | 2631 | C | 2632 | U | 2633 | cWW | tWW | cWW | |
| 4 | IL_3U5H_083 | 3U5H | 0.0000 | 0 | 5 | 25S rRNA | A | 1895 | A | 1896 | G | 1897 | * | C | 2338 | C | 2339 | U | 2340 | cWW | tWW | cWW | |
| 5 | IL_4CUV_082 | 4CUV | 0.1085 | 0 | 1 | 25S RRNA | A | 1895 | A | 1896 | G | 1897 | * | C | 2338 | C | 2339 | U | 2340 | cWW | tWW | cWW | |
| 6 | IL_1VW3_047 | 1VW3 | 0.1520 | 0 | A | 21S ribosomal RNA | G | 1615 | A | 1616 | A | 1617 | * | U | 1895 | C | 1896 | C | 1897 | cWW | tWW | cWW | |
| 7 | IL_2QBG_063 | 2QBG | 0.1329 | 0 | B | 23S rRNA | G | 1663 | A | 1664 | A | 1665 | * | U | 1995 | C | 1996 | C | 1997 | cWW | tWW | cWW | |
| 8 | IL_1S72_060 | 1S72 | 0.1147 | 0 | Isolated tWW turn (H) | 0 | LSU rRNA | U | 1741 | A | 1742 | G | 1743 | * | C | 2036 | C | 2037 | A | 2038 | cWW | tWW | cWW |
| 9 | IL_4QCN_061 | 4QCN | 0.2257 | 0 | A | 23S Ribosomal RNA | C | 1710 | A | 1711 | A | 1712 | * | U | 2017 | C | 2018 | G | 2019 | cWW | tWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| AAG*CCU | 4 |
| GAA*UCC | 2 |
| GUUAGUAC*GGAAUAC | 1 |
| UAG*CCA | 1 |
| CAA*UCG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| A*C | 8 |
| UUAGUA*GAAUA | 1 |
Release history
| Release | 1.17 |
|---|---|
| Date | 2014-09-04 |
| Status | Updated, 1 parent |
Parent motifs
| Parent motif | Common motif instances | Only in IL_86357.6 | Only in the parent motif |
|---|---|---|---|
| IL_86357.5 Compare | IL_1VW3_047, IL_4CUV_082, IL_2QBG_063, IL_3U5H_083, IL_1S72_060, IL_4A1B_079 | IL_1VX6_084, IL_4QCN_061, IL_1VWW_110 | IL_4NVV_065 |
Children motifs
| Child motif | Common motif instances | Only in IL_86357.6 | Only in the child motif |
|---|---|---|---|
| IL_75508.1 Compare | IL_1VW3_047, IL_4CUV_082, IL_2QBG_063, IL_4QCN_061, IL_4A1B_079, IL_1S72_060, IL_3U5H_083, IL_1VX6_084 | IL_1VWW_110 | IL_3Q1Q_006, IL_3LOA_003, IL_4W21_074, IL_4W21_107 |
- Annotations
-
- (8)
- Isolated tWW turn (H) (1)
- Basepair signature
- cWW-tWW-cWW
- Heat map statistics
- Min 0.08 | Avg 0.17 | Max 0.33
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