Motif IL_75508.1 Version IL_75508.1 of this group appears in releases 1.18 to 1.18
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | break | 4 | 5 | 6 | 1-6 | 2-5 | 3-4 | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_3LOA_003 | 3LOA | 0.9227 | 1 | Decoding loop with one bulged A | B+A | RNA (23-mer) | G | 1491 | A | 1493 | G | 1494 | * | C | 1407 | A | 1408 | C | 1409 | cWW | cWW | |
| 2 | IL_3Q1Q_006 | 3Q1Q | 0.9434 | 1 | B | RNase P RNA | G | 198 | G | 199 | U | 201 | * | A | 179 | G | 180 | C | 181 | cWW | ncBW | cWW | |
| 3 | IL_4W21_074 | 4W21 | 0.8749 | 0 | 5 | 28S ribosomal RNA | A | 1858 | C | 1859 | U | 1860 | * | A | 1874 | C | 1875 | U | 1876 | cBW | cWW | ||
| 4 | IL_4QCN_061 | 4QCN | 0.2257 | 0 | A | 23S Ribosomal RNA | C | 1710 | A | 1711 | A | 1712 | * | U | 2017 | C | 2018 | G | 2019 | cWW | tWW | cWW | |
| 5 | IL_1VW3_047 | 1VW3 | 0.1520 | 0 | A | 21S ribosomal RNA | G | 1615 | A | 1616 | A | 1617 | * | U | 1895 | C | 1896 | C | 1897 | cWW | tWW | cWW | |
| 6 | IL_2QBG_063 | 2QBG | 0.1329 | 0 | B | 23S rRNA | G | 1663 | A | 1664 | A | 1665 | * | U | 1995 | C | 1996 | C | 1997 | cWW | tWW | cWW | |
| 7 | IL_1S72_060 | 1S72 | 0.1147 | 0 | Isolated tWW turn (H) | 0 | LSU rRNA | U | 1741 | A | 1742 | G | 1743 | * | C | 2036 | C | 2037 | A | 2038 | cWW | tWW | cWW |
| 8 | IL_4CUV_082 | 4CUV | 0.1085 | 0 | 1 | 25S RRNA | A | 1895 | A | 1896 | G | 1897 | * | C | 2338 | C | 2339 | U | 2340 | cWW | tWW | cWW | |
| 9 | IL_3U5H_083 | 3U5H | 0.0000 | 0 | 5 | 25S rRNA | A | 1895 | A | 1896 | G | 1897 | * | C | 2338 | C | 2339 | U | 2340 | cWW | tWW | cWW | |
| 10 | IL_1VX6_084 | 1VX6 | 0.0800 | 0 | A | 28S ribosomal RNA | A | 2163 | A | 2164 | G | 2165 | * | C | 2631 | C | 2632 | U | 2633 | cWW | tWW | cWW | |
| 11 | IL_4A1B_079 | 4A1B | 0.1233 | 0 | 1 | 26S RRNA | A | 1919 | A | 1920 | G | 1921 | * | C | 2333 | C | 2334 | U | 2335 | cWW | tWW | cWW | |
| 12 | IL_4W21_107 | 4W21 | 0.1892 | 0 | 5 | 28S ribosomal RNA | A | 2844 | A | 2845 | G | 2846 | * | C | 3842 | C | 3843 | U | 3844 | ncWW | tWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| AAG*CCU | 5 |
| GAA*UCC | 2 |
| GAAG*CAC | 1 |
| GGCU*AGC | 1 |
| ACU*ACU | 1 |
| CAA*UCG | 1 |
| UAG*CCA | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| A*C | 9 |
| AA*A | 1 |
| GC*G | 1 |
| C*C | 1 |
Release history
| Release | 1.18 |
|---|---|
| Date | 2014-10-07 |
| Status | > 2 parents |
Parent motifs
| Parent motif | Common motif instances | Only in IL_75508.1 | Only in the parent motif |
|---|---|---|---|
| IL_86357.6 Compare | IL_1VW3_047, IL_4CUV_082, IL_2QBG_063, IL_4QCN_061, IL_4A1B_079, IL_1S72_060, IL_3U5H_083, IL_1VX6_084 | IL_3Q1Q_006, IL_3LOA_003, IL_4W21_074, IL_4W21_107 | IL_1VWW_110 |
| IL_53587.1 Compare | IL_3LOA_003 | IL_4CUV_082, IL_4W21_074, IL_2QBG_063, IL_4QCN_061, IL_3Q1Q_006, IL_3U5H_083, IL_1S72_060, IL_4A1B_079, IL_1VW3_047, IL_4W21_107, IL_1VX6_084 | IL_1S72_046, IL_4CUV_084, IL_4KYY_002, IL_2QBG_045, IL_4QCN_030, IL_3U5H_062, IL_4TS2_003, IL_3U5F_093, IL_1VW3_049, IL_4QCN_041, IL_4CUV_064, IL_2QBG_065, IL_4QCN_063, IL_3U5H_085, IL_1VW3_035, IL_4IOA_043, IL_3U5H_052, IL_1VX6_063, IL_1VW3_070, IL_1S72_062, IL_4A1B_081 |
| IL_60760.1 Compare | IL_3Q1Q_006 | IL_3LOA_003, IL_4CUV_082, IL_4W21_074, IL_2QBG_063, IL_4QCN_061, IL_3U5H_083, IL_1S72_060, IL_4A1B_079, IL_1VW3_047, IL_4W21_107, IL_1VX6_084 | IL_3E5C_001, IL_3BNL_002, IL_4CUV_113, IL_4M4O_004, IL_4M6D_013 |
Children motifs
This motif has no children motifs.- Annotations
-
- (10)
- Isolated tWW turn (H) (1)
- Decoding loop with one bulged A (1)
- Basepair signature
- cWW-tWW-cWW
- Heat map statistics
- Min 0.08 | Avg 0.47 | Max 0.99
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