Motif IL_87899.2 Version IL_87899.2 of this group appears in releases 1.18 to 1.18
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | break | 6 | 7 | 8 | 9 | 10 | 1-10 | 2-3 | 3-8 | 4-7 | 5-6 | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_4QCN_027 | 4QCN | 0.2193 | 0 | A | 23S Ribosomal RNA | U | 905 | G | 906 | U | 907 | A | 908 | G | 909 | * | C | 961 | G | 962 | A | 963 | A | 964 | G | 965 | cWW | cSH | tWH | tHS | cWW |
| 2 | IL_1S72_034 | 1S72 | 0.0000 | 0 | 0 | LSU rRNA | G | 952 | G | 953 | U | 954 | A | 955 | G | 956 | * | C | 1011 | A | 1012 | A | 1013 | A | 1014 | C | 1015 | cWW | cSH | tWH | tHS | cWW |
| 3 | IL_2QBG_031 | 2QBG | 0.1602 | 0 | B | 23S rRNA | G | 858 | G | 859 | U | 860 | A | 861 | G | 862 | * | C | 915 | G | 916 | A | 917 | A | 918 | U | 919 | cWW | cSH | tWH | tHS | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UGUAG*CGAAG | 1 |
| GGUAG*CAAAC | 1 |
| GGUAG*CGAAU | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GUA*GAA | 2 |
| GUA*AAA | 1 |
Release history
| Release | 1.18 |
|---|---|
| Date | 2014-10-07 |
| Status | Updated, 1 parent |
Parent motifs
| Parent motif | Common motif instances | Only in IL_87899.2 | Only in the parent motif |
|---|---|---|---|
| IL_87899.1 Compare | IL_1S72_034, IL_2QBG_031, IL_4QCN_027 | IL_4CUX_050 |
Children motifs
This motif has no children motifs.- Annotations
-
- (3)
- Basepair signature
- cWW-R-cSH-tWH-tHS-cWW
- Heat map statistics
- Min 0.16 | Avg 0.15 | Max 0.30
Coloring options: