Motif IL_87899.1 Version IL_87899.1 of this group appears in releases 1.17 to 1.17
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | break | 6 | 7 | 8 | 9 | 10 | 1-10 | 2-3 | 2-9 | 3-8 | 4-7 | 5-6 | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_2QBG_031 | 2QBG | 0.1602 | 0 | B | LSU rRNA | G | 858 | G | 859 | U | 860 | A | 861 | G | 862 | * | C | 915 | G | 916 | A | 917 | A | 918 | U | 919 | cWW | cSH | tWH | tHS | cWW | |
| 2 | IL_1S72_034 | 1S72 | 0.0000 | 0 | 0 | LSU rRNA | G | 952 | G | 953 | U | 954 | A | 955 | G | 956 | * | C | 1011 | A | 1012 | A | 1013 | A | 1014 | C | 1015 | cWW | cSH | tWH | tHS | cWW | |
| 3 | IL_4QCN_027 | 4QCN | 0.2193 | 0 | A | LSU rRNA | U | 905 | G | 906 | U | 907 | A | 908 | G | 909 | * | C | 961 | G | 962 | A | 963 | A | 964 | G | 965 | cWW | cSH | tWH | tHS | cWW | |
| 4 | IL_4CUX_050 | 4CUX | 0.7212 | 0 | 2 | SSU rRNA | C | 1010 | G | 1011 | U | 1012 | A | 1013 | G | 1014 | * | C | 990 | G | 991 | A | 992 | A | 993 | G | 994 | ncWW | ntSH | ntHS | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GGUAG*CGAAU | 1 |
| GGUAG*CAAAC | 1 |
| UGUAG*CGAAG | 1 |
| CGUAG*CGAAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GUA*GAA | 3 |
| GUA*AAA | 1 |
Release history
| Release | 1.17 |
|---|---|
| Date | 2014-09-04 |
| Status | New id, 2 parents |
Parent motifs
| Parent motif | Common motif instances | Only in IL_87899.1 | Only in the parent motif |
|---|---|---|---|
| IL_05723.2 Compare | IL_1S72_034, IL_2QBG_031 | IL_4CUX_050, IL_4QCN_027 | IL_4NVV_029 |
| IL_24982.7 Compare | IL_4CUX_050 | IL_1S72_034, IL_2QBG_031, IL_4QCN_027 | IL_1S72_055, IL_3U5F_053, IL_4NVV_052, IL_2QBG_058, IL_2AW7_040, IL_1FJG_033, IL_3U5F_035, IL_4BPP_035, IL_1FJG_023, IL_2QBG_052, IL_1S72_023, IL_4BPP_049, IL_2AW7_030, IL_2QWY_004, IL_4IOA_051, IL_4IOA_026 |
Children motifs
| Child motif | Common motif instances | Only in IL_87899.1 | Only in the child motif |
|---|---|---|---|
| IL_87899.2 Compare | IL_1S72_034, IL_2QBG_031, IL_4QCN_027 | IL_4CUX_050 | |
| IL_77895.1 Compare | IL_4CUX_050 | IL_2QBG_031, IL_1S72_034, IL_4QCN_027 | IL_1S72_055, IL_4W23_033, IL_2QBG_052, IL_2QBG_058, IL_3U5F_053, IL_3J7A_029, IL_2AW7_040, IL_1FJG_033, IL_3U5F_035, IL_4BPP_035, IL_4IOA_051, IL_4QCN_049, IL_3J7A_061, IL_1S72_023, IL_4BPP_049, IL_2AW7_030, IL_2QWY_004, IL_1FJG_023, IL_4IOA_026 |
- Annotations
-
- (4)
- Basepair signature
- cWW-R-cSH-tWH-tHS-cWW
- Heat map statistics
- Min 0.16 | Avg 0.36 | Max 0.78
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