Motif IL_87899.1 Version IL_87899.1 of this group appears in releases 1.17 to 1.17

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	Chain(s)	Standardized name		1		2		3		4		5	break		6		7		8		9		10	1-10	2-3	2-9	3-8	4-7	5-6
1	IL_2QBG_031	2QBG	0.1602	B	23S rRNA	G	858	G	859	U	860	A	861	G	862	*	C	915	G	916	A	917	A	918	U	919	cWW	cSH		tWH	tHS	cWW
2	IL_1S72_034	1S72	0.0000	0	LSU rRNA	G	952	G	953	U	954	A	955	G	956	*	C	1011	A	1012	A	1013	A	1014	C	1015	cWW	cSH		tWH	tHS	cWW
3	IL_4QCN_027	4QCN	0.2193	A	23S Ribosomal RNA	U	905	G	906	U	907	A	908	G	909	*	C	961	G	962	A	963	A	964	G	965	cWW	cSH		tWH	tHS	cWW
4	IL_4CUX_050	4CUX	0.7212	2	18S RRNA	C	1010	G	1011	U	1012	A	1013	G	1014	*	C	990	G	991	A	992	A	993	G	994	ncWW		ntSH		ntHS	cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
GGUAG*CGAAU	1
GGUAG*CAAAC	1
UGUAG*CGAAG	1
CGUAG*CGAAG	1

Non-Watson-Crick part of the motif

Sequence	Counts
GUA*GAA	3
GUA*AAA	1

Release history

Release	1.17
Date	2014-09-04
Status	New id, 2 parents

Parent motifs

Parent motif	Common motif instances	Only in IL_87899.1	Only in the parent motif
IL_05723.2 Compare	IL_1S72_034, IL_2QBG_031	IL_4CUX_050, IL_4QCN_027	IL_4NVV_029
IL_24982.7 Compare	IL_4CUX_050	IL_1S72_034, IL_2QBG_031, IL_4QCN_027	IL_1S72_055, IL_3U5F_053, IL_4NVV_052, IL_2QBG_058, IL_2AW7_040, IL_1FJG_033, IL_3U5F_035, IL_4BPP_035, IL_1FJG_023, IL_2QBG_052, IL_1S72_023, IL_4BPP_049, IL_2AW7_030, IL_2QWY_004, IL_4IOA_051, IL_4IOA_026

Children motifs

Child motif	Common motif instances	Only in IL_87899.1	Only in the child motif
IL_87899.2 Compare	IL_1S72_034, IL_2QBG_031, IL_4QCN_027	IL_4CUX_050
IL_77895.1 Compare	IL_4CUX_050	IL_2QBG_031, IL_1S72_034, IL_4QCN_027	IL_1S72_055, IL_4W23_033, IL_2QBG_052, IL_2QBG_058, IL_3U5F_053, IL_3J7A_029, IL_2AW7_040, IL_1FJG_033, IL_3U5F_035, IL_4BPP_035, IL_4IOA_051, IL_4QCN_049, IL_3J7A_061, IL_1S72_023, IL_4BPP_049, IL_2AW7_030, IL_2QWY_004, IL_1FJG_023, IL_4IOA_026

Annotations: (4)
Basepair signature: cWW-R-cSH-tWH-tHS-cWW
Heat map statistics: Min 0.16 | Avg 0.36 | Max 0.78

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Coloring options: Nucleotide numbers

Motif IL_87899.1 Version IL_87899.1 of this group appears in releases 1.17 to 1.17 Download Csv Json

3D structures

Complete motif including flanking bases

Non-Watson-Crick part of the motif

Release history

Parent motifs

Children motifs

Motif IL_87899.1 Version IL_87899.1 of this group appears in releases 1.17 to 1.17

Download

Csv

Json