IL_2FQN_002

3D structure

PDB id

2FQN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Homo sapiens cytoplasmic ribosomal decoding A site

Experimental method

X-RAY DIFFRACTION

Resolution

2.3 Å

Loop

Sequence

CGCU*AAAAG

Length

9 nucleotides

Bulged bases (A, C, G, U)

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_45102.1

Basepair signature

cWW-L-R-R-cWW-cWW

Number of instances in this motif group

1

Unit IDs

2FQN|1|A|C|7
2FQN|1|A|G|8
2FQN|1|A|C|9
2FQN|1|A|U|10
*
2FQN|1|B|A|38
2FQN|1|B|A|39
2FQN|1|B|A|40
2FQN|1|B|A|41
2FQN|1|B|G|42

Current chains

Chain A

5'-R(*UP*UP*GP*CP*GP*UP*CP*GP*CP*UP*CP*CP*GP*GP*AP*AP*AP*AP*GP*UP*CP*GP*C)-3'

Chain B

5'-R(*UP*UP*GP*CP*GP*UP*CP*GP*CP*UP*CP*CP*GP*GP*AP*AP*AP*AP*GP*UP*CP*GP*C)-3'

Nearby chains