Motif IL_21788.1 Version IL_21788.1 of this group appears in releases 2.0 to 2.0
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | break | 5 | 6 | 7 | 1-6 | 1-7 | 3-6 | 4-5 | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | ➜ | 3J7P | 0.1948 | 3 | S2 | SSU rRNA | G | 41 | U | 44 | A | 45 | G | 47 | * | C | 479 | G | 480 | C | 481 | cWW | tSS | cWW | ||
| 2 | ➜ | 5A2Q | 0.1264 | 3 | 2 | SSU rRNA | G | 41 | U | 44 | A | 45 | G | 47 | * | C | 479 | G | 480 | C | 481 | cWW | tSS | cWW | ||
| 3 | ➜ | 3JAM | 0.1136 | 3 | 2 | SSU rRNA | G | 42 | U | 45 | A | 46 | G | 48 | * | C | 430 | G | 431 | C | 432 | cWW | cWW | |||
| 4 | ➜ | 3J7A | 0.0000 | 3 | A | SSU rRNA | G | 42 | U | 45 | A | 46 | G | 48 | * | C | 437 | G | 438 | C | 439 | cWW | tSS | cWW | ||
| 5 | ➜ | 4V88 | 0.0953 | 3 | A6 | SSU rRNA | G | 42 | U | 45 | A | 46 | G | 48 | * | C | 431 | G | 432 | C | 433 | cWW | ntSS | cWW | ||
| 6 | ➜ | 3J9W | 0.2906 | 2 | AA | SSU rRNA | C | 49 | U | 51 | A | 52 | U | 54 | * | A | 367 | G | 368 | G | 369 | ncWW | cWW | cWW | ||
| 7 | ➜ | 4V4Q | 0.2992 | 2 | CA | SSU rRNA | C | 47 | U | 49 | A | 50 | C | 52 | * | G | 359 | G | 360 | G | 361 | cWW | tSS | cWW | ||
| 8 | ➜ | 1FJG | 0.2971 | 2 | A | SSU rRNA | C | 47 | U | 49 | A | 50 | G | 52 | * | U | 359 | A | 360 | G | 361 | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GAUUAAG*CGC | 5 |
| CCUAAG*UAG | 1 |
| CCUAAU*AGG | 1 |
| CCUAAC*GGG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AUUAA*G | 5 |
| CUAA*G | 2 |
| CUAA*A | 1 |
Release history
| Release | 2.0 |
|---|---|
| Date | 2017-04-24 |
| Status | New id, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
- Basepair signature
- cWW-L-tSS-cWW
- Heat map statistics
- Min 0.10 | Avg 0.22 | Max 0.35
Coloring options: