Motif IL_24219.1 Version IL_24219.1 of this group appears in releases 2.0 to 2.0
| #S | Loop id | PDB | Disc | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | break | 4 | 5 | 6 | 7 | 8 | 9 | 1-9 | 2-3 | 3-4 | 5-9 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | ➜ | 4V88 | 0.1486 | Major groove platform; stack outside cWW | A6 | SSU rRNA | C | 1389 | U | 1390 | A | 1391 | * | U | 1407 | G | 1408 | G | 1409 | A | 1410 | A | 1411 | G | 1412 | cWW | cWW | tWH | |
| 2 | ➜ | 4BTS | 0.0000 | DA | SSU rRNA | C | 1359 | U | 1360 | A | 1361 | * | U | 1378 | G | 1379 | G | 1380 | A | 1381 | A | 1382 | G | 1383 | cWW | cWW | tWH | ||
| 3 | ➜ | 3JAM | 0.2215 | 2 | SSU rRNA | C | 1387 | U | 1388 | A | 1389 | * | U | 1405 | G | 1406 | G | 1407 | A | 1408 | A | 1409 | G | 1410 | cWW | ncSH | cWW | tWH | |
| 4 | ➜ | 3J7A | 0.3870 | A | SSU rRNA | C | 1635 | A | 1636 | U | 1637 | * | A | 1653 | G | 1654 | G | 1655 | A | 1656 | A | 1657 | G | 1658 | cWW | ncSH | cWW | tWH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CUA*UGGAAG | 3 |
| CAU*AGGAAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| U*GGAA | 3 |
| A*GGAA | 1 |
Release history
| Release | 2.0 |
|---|---|
| Date | 2017-04-24 |
| Status | New id, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- Major groove platform; stack outside cWW (1)
- Basepair signature
- cWW-L-tWH-R-R-R-cWW
- Heat map statistics
- Min 0.15 | Avg 0.23 | Max 0.46
Coloring options: