Motif IL_26592.1 Release 2.0
- Description:
- No description added yet.
- Basepair signature:
- cWW-L-R-R-R-R-cWW
- Free text annotation:
- No annotation provided yet.
- Intraclusteral linkage
- Min 0.09 | Avg 0.08 | Max 0.12
#D - ordering by discrepancy relative to the exemplar,
#S - ordering by similarity (same as in the heat map).
More
| #D | #S | Loop id | PDB | Disc | Bulges | 1 | 2 | 3 | break | 4 | 5 | 6 | 7 | 8 | 9 | 1-9 | 3-4 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 3 | ➜ | 4ZT0 | 0.0000 | 1 | A | 26 | G | 27 | G | 29 | * | C | 40 | A | 41 | A | 42 | G | 43 | U | 44 | U | 45 | cWW | cWW |
| 2 | 2 | ➜ | 4OO8 | 0.0870 | 1 | A | 26 | G | 27 | G | 29 | * | C | 40 | A | 41 | A | 42 | G | 43 | U | 44 | U | 45 | cWW | cWW |
| 3 | 1 | ➜ | 5FW3 | 0.1112 | 1 | A | 26 | G | 27 | G | 29 | * | C | 40 | A | 41 | A | 42 | G | 43 | U | 44 | U | 45 | cWW | cWW |
| 4 | 4 | ➜ | 5F9R | 0.1190 | 1 | A | 26 | G | 27 | G | 29 | * | C | 58 | A | 59 | A | 60 | G | 61 | U | 62 | U | 63 | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| AGAG*CAAGUU | 4 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GA*AAGU | 4 |
Release history
| Release | 2.0 |
|---|---|
| Date | 2017-04-24 |
| Status | New id, no parents |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.Coloring options: