IL_27447.1

#S	Loop id	PDB	Disc	Annotation	Chain(s)	Standardized name		1		2		3		4	break		5		6	1-6	2-3	2-4	2-5	4-5
1	IL_5AJ0_098➜	5AJ0	0.6305		A2	LSU rRNA	G	2385	G	2386	U	2387	U	2388	*	A	2762	C	2763	cWW				cWW
2	IL_4IOA_048➜	4IOA	0.6012		X	LSU rRNA	G	1323	G	1324	U	1325	U	1326	*	A	1619	C	1620	cWW			ncHW	cWW
3	IL_4V88_308➜	4V88	0.5968		A5	LSU rRNA	G	1492	G	1493	U	1494	U	1495	*	A	1835	C	1836	cWW			ncHW	cWW
4	IL_4V9F_050➜	4V9F	0.5971	Major groove platform; stack outside cWW	0	LSU rRNA	G	1416	G	1417	U	1418	U	1419	*	A	1678	C	1679	cWW				cWW
5	IL_5J7L_290➜	5J7L	0.5737	Major groove platform; stack outside cWW	DA	LSU rRNA	G	1310	G	1311	U	1312	U	1313	*	A	1603	C	1604	cWW				cWW
6	IL_4V8P_367➜	4V8P	0.5590		F1	LSU rRNA	G	1518	G	1519	U	1520	U	1521	*	A	1859	C	1860	cWW			ncHW	cWW
7	IL_3J9W_114➜	3J9W	0.5823		BA	LSU rRNA	G	1349	U	1350	U	1351	U	1352	*	A	1648	C	1649	cWW				cWW
8	IL_4V91_082➜	4V91	0.3368		1	LSU rRNA	G	1898	G	1899	A	1900	A	1901	*	U	2336	C	2337	cWW			tSH	cWW
9	IL_4V88_325➜	4V88	0.3380		A5	LSU rRNA	G	1898	G	1899	A	1900	A	1901	*	U	2336	C	2337	cWW			tSH	cWW
10	IL_4V8P_382➜	4V8P	0.3245		F1	LSU rRNA	G	1922	G	1923	A	1924	A	1925	*	U	2331	C	2332	cWW			tSH	cWW
11	IL_5AJ0_115➜	5AJ0	0.3350		A2	LSU rRNA	G	2826	G	2827	A	2828	A	2829	*	U	3811	C	3812	cWW			tSH	cWW
12	IL_5FDU_067➜	5FDU	0.3447		1A	LSU rRNA	G	1713	G	1714	A	1715	A	1716	*	U	2015	C	2016	cWW			tSH	cWW
13	IL_3J7Y_030➜	3J7Y	0.3127		A	LSU rRNA	G	2470	G	2471	A	2472	A	2473	*	U	2656	C	2657	cWW			tSH	cWW
14	IL_4V9F_061➜	4V9F	0.3422	Major groove platform; stack outside cWW	0	LSU rRNA	G	1744	G	1745	A	1746	A	1747	*	U	2034	C	2035	cWW			tSH	cWW
15	IL_4V9F_008➜	4V9F	0.2330	Major groove platform; stack outside cWW	0	LSU rRNA	C	245	G	246	A	247	A	248	*	U	265	G	266	cWW			tSH	cWW
16	IL_5A2Q_044➜	5A2Q	0.1758		2	SSU rRNA	C	1019	A	1020	U	1021	U	1022	*	A	922	G	923	cWW	cSH		ncSW	cWW
17	IL_4V88_428➜	4V88	0.1313	Major groove platform; stack outside cWW	A6	SSU rRNA	C	962	A	963	U	964	U	965	*	A	865	G	866	cWW			ntSH	cWW
18	IL_3J7A_040➜	3J7A	0.1434		A	SSU rRNA	C	1031	A	1032	U	1033	U	1034	*	A	933	G	934	cWW		ncSH	ncSW	cWW
19	IL_4BTS_302➜	4BTS	0.0000		DA	SSU rRNA	C	940	A	941	U	942	U	943	*	A	843	G	844	cWW	ncSH		ntSH	cWW
20	IL_3J7P_195➜	3J7P	0.1731		S2	SSU rRNA	C	1019	A	1020	U	1021	U	1022	*	A	922	G	923	cWW	cSH		ncSW	cWW
21	IL_5FDU_051➜	5FDU	0.2537		1A	LSU rRNA	G	1356	G	1357	U	1358	U	1359	*	A	1649	C	1650	cWW	cSH		ntSH	cWW
22	IL_4QK8_003➜	4QK8	0.2151		A	C-di-AMP riboswitch	C	89	G	90	A	91	C	92	*	G	39	G	40	cWW		ncSH	tSH	cWW
23	IL_4QK9_003➜	4QK9	0.3028	Major groove platform; stack outside cWW	A	C-di-AMP riboswitch	C	93	G	94	U	95	C	96	*	G	43	G	44	cWW			ntSH	cWW
24	IL_4W92_003➜	4W92	0.2393		C	cyclic di-AMP riboswitch	C	96	G	97	U	98	C	99	*	G	58	G	59	cWW			tSH	cWW
25	IL_4IOA_022➜	4IOA	0.3496		X	LSU rRNA	U	857	G	858	U	859	U	860	*	A	944	G	945	cWW			ntSH	cWW
26	IL_1NTB_003➜	1NTB	0.3990		A+B	RNA (22-mer) + RNA (18-mer)	C	15	U	16	U	17	C	18	*	G	110	G	111	cWW		ncSH		cWW
27	IL_5AJ3_008➜	5AJ3	0.3958		A	SSU rRNA	G	116	C	117	A	118	C	119	*	G	133	C	134	cWW		cSH		cWW
28	IL_3J79_021➜	3J79	0.6846		A	LSU rRNA	G	591	C	592	A	593	C	594	*	G	599	U	600	cWW		ncSH		cWW
29	IL_3J9M_069➜	3J9M	0.6262		AA	SSU rRNA	G	762	C	763	A	764	C	765	*	G	777	C	778	cWW		cSH		cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
GGUU*AC	7
GGAA*UC	7
CAUU*AG	5
CGUC*GG	2
GCAC*GC	2
GCAC*GU	1
CUUC*GG	1
CGAC*GG	1
GUUU*AC	1
CGAA*UG	1
UGUU*AG	1

Non-Watson-Crick part of the motif

Sequence	Counts
GU*	10
GA*	9
AU*	5
CA*	3
UU*	2

Release history

Release	2.0
Date	2017-04-24
Status	New id, 1 parent

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Motif IL_27447.1 Version IL_27447.1 of this group appears in releases 2.0 to 2.0 Download Csv Json

3D structures

Complete motif including flanking bases

Non-Watson-Crick part of the motif

Release history

Parent motifs

Children motifs

Motif IL_27447.1 Version IL_27447.1 of this group appears in releases 2.0 to 2.0

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Csv

Json