Motif IL_27447.1 Version IL_27447.1 of this group appears in releases 2.0 to 2.0
#S | Loop id | PDB | Disc | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | break | 5 | 6 | 1-6 | 2-3 | 2-4 | 2-5 | 4-5 | ||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | ➜ | 5AJ0 | 0.6305 | A2 | LSU rRNA | G | 2385 | G | 2386 | U | 2387 | U | 2388 | * | A | 2762 | C | 2763 | cWW | cWW | ||||
2 | ➜ | 4IOA | 0.6012 | X | LSU rRNA | G | 1323 | G | 1324 | U | 1325 | U | 1326 | * | A | 1619 | C | 1620 | cWW | ncHW | cWW | |||
3 | ➜ | 4V88 | 0.5968 | A5 | LSU rRNA | G | 1492 | G | 1493 | U | 1494 | U | 1495 | * | A | 1835 | C | 1836 | cWW | ncHW | cWW | |||
4 | ➜ | 4V9F | 0.5971 | Major groove platform; stack outside cWW | 0 | LSU rRNA | G | 1416 | G | 1417 | U | 1418 | U | 1419 | * | A | 1678 | C | 1679 | cWW | cWW | |||
5 | ➜ | 5J7L | 0.5737 | Major groove platform; stack outside cWW | DA | LSU rRNA | G | 1310 | G | 1311 | U | 1312 | U | 1313 | * | A | 1603 | C | 1604 | cWW | cWW | |||
6 | ➜ | 4V8P | 0.5590 | F1 | LSU rRNA | G | 1518 | G | 1519 | U | 1520 | U | 1521 | * | A | 1859 | C | 1860 | cWW | ncHW | cWW | |||
7 | ➜ | 3J9W | 0.5823 | BA | LSU rRNA | G | 1349 | U | 1350 | U | 1351 | U | 1352 | * | A | 1648 | C | 1649 | cWW | cWW | ||||
8 | ➜ | 4V91 | 0.3368 | 1 | LSU rRNA | G | 1898 | G | 1899 | A | 1900 | A | 1901 | * | U | 2336 | C | 2337 | cWW | tSH | cWW | |||
9 | ➜ | 4V88 | 0.3380 | A5 | LSU rRNA | G | 1898 | G | 1899 | A | 1900 | A | 1901 | * | U | 2336 | C | 2337 | cWW | tSH | cWW | |||
10 | ➜ | 4V8P | 0.3245 | F1 | LSU rRNA | G | 1922 | G | 1923 | A | 1924 | A | 1925 | * | U | 2331 | C | 2332 | cWW | tSH | cWW | |||
11 | ➜ | 5AJ0 | 0.3350 | A2 | LSU rRNA | G | 2826 | G | 2827 | A | 2828 | A | 2829 | * | U | 3811 | C | 3812 | cWW | tSH | cWW | |||
12 | ➜ | 5FDU | 0.3447 | 1A | LSU rRNA | G | 1713 | G | 1714 | A | 1715 | A | 1716 | * | U | 2015 | C | 2016 | cWW | tSH | cWW | |||
13 | ➜ | 3J7Y | 0.3127 | A | LSU rRNA | G | 2470 | G | 2471 | A | 2472 | A | 2473 | * | U | 2656 | C | 2657 | cWW | tSH | cWW | |||
14 | ➜ | 4V9F | 0.3422 | Major groove platform; stack outside cWW | 0 | LSU rRNA | G | 1744 | G | 1745 | A | 1746 | A | 1747 | * | U | 2034 | C | 2035 | cWW | tSH | cWW | ||
15 | ➜ | 4V9F | 0.2330 | Major groove platform; stack outside cWW | 0 | LSU rRNA | C | 245 | G | 246 | A | 247 | A | 248 | * | U | 265 | G | 266 | cWW | tSH | cWW | ||
16 | ➜ | 5A2Q | 0.1758 | 2 | SSU rRNA | C | 1019 | A | 1020 | U | 1021 | U | 1022 | * | A | 922 | G | 923 | cWW | cSH | ncSW | cWW | ||
17 | ➜ | 4V88 | 0.1313 | Major groove platform; stack outside cWW | A6 | SSU rRNA | C | 962 | A | 963 | U | 964 | U | 965 | * | A | 865 | G | 866 | cWW | ntSH | cWW | ||
18 | ➜ | 3J7A | 0.1434 | A | SSU rRNA | C | 1031 | A | 1032 | U | 1033 | U | 1034 | * | A | 933 | G | 934 | cWW | ncSH | ncSW | cWW | ||
19 | ➜ | 4BTS | 0.0000 | DA | SSU rRNA | C | 940 | A | 941 | U | 942 | U | 943 | * | A | 843 | G | 844 | cWW | ncSH | ntSH | cWW | ||
20 | ➜ | 3J7P | 0.1731 | S2 | SSU rRNA | C | 1019 | A | 1020 | U | 1021 | U | 1022 | * | A | 922 | G | 923 | cWW | cSH | ncSW | cWW | ||
21 | ➜ | 5FDU | 0.2537 | 1A | LSU rRNA | G | 1356 | G | 1357 | U | 1358 | U | 1359 | * | A | 1649 | C | 1650 | cWW | cSH | ntSH | cWW | ||
22 | ➜ | 4QK8 | 0.2151 | A | C-di-AMP riboswitch | C | 89 | G | 90 | A | 91 | C | 92 | * | G | 39 | G | 40 | cWW | ncSH | tSH | cWW | ||
23 | ➜ | 4QK9 | 0.3028 | Major groove platform; stack outside cWW | A | C-di-AMP riboswitch | C | 93 | G | 94 | U | 95 | C | 96 | * | G | 43 | G | 44 | cWW | ntSH | cWW | ||
24 | ➜ | 4W92 | 0.2393 | C | cyclic di-AMP riboswitch | C | 96 | G | 97 | U | 98 | C | 99 | * | G | 58 | G | 59 | cWW | tSH | cWW | |||
25 | ➜ | 4IOA | 0.3496 | X | LSU rRNA | U | 857 | G | 858 | U | 859 | U | 860 | * | A | 944 | G | 945 | cWW | ntSH | cWW | |||
26 | ➜ | 1NTB | 0.3990 | A+B | RNA (22-mer) + RNA (18-mer) | C | 15 | U | 16 | U | 17 | C | 18 | * | G | 110 | G | 111 | cWW | ncSH | cWW | |||
27 | ➜ | 5AJ3 | 0.3958 | A | SSU rRNA | G | 116 | C | 117 | A | 118 | C | 119 | * | G | 133 | C | 134 | cWW | cSH | cWW | |||
28 | ➜ | 3J79 | 0.6846 | A | LSU rRNA | G | 591 | C | 592 | A | 593 | C | 594 | * | G | 599 | U | 600 | cWW | ncSH | cWW | |||
29 | ➜ | 3J9M | 0.6262 | AA | SSU rRNA | G | 762 | C | 763 | A | 764 | C | 765 | * | G | 777 | C | 778 | cWW | cSH | cWW |
3D structures
Complete motif including flanking bases
Sequence | Counts |
---|---|
GGUU*AC | 7 |
GGAA*UC | 7 |
CAUU*AG | 5 |
CGUC*GG | 2 |
GCAC*GC | 2 |
GCAC*GU | 1 |
CUUC*GG | 1 |
CGAC*GG | 1 |
GUUU*AC | 1 |
CGAA*UG | 1 |
UGUU*AG | 1 |
Non-Watson-Crick part of the motif
Sequence | Counts |
---|---|
GU* | 10 |
GA* | 9 |
AU* | 5 |
CA* | 3 |
UU* | 2 |
Release history
Release | 2.0 |
---|---|
Date | 2017-04-24 |
Status | New id, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- Major groove platform; stack outside cWW (6)
- Basepair signature
- cWW-tSH-L-cWW
- Heat map statistics
- Min 0.07 | Avg 0.45 | Max 0.85
Coloring options: