Motif IL_44722.1 Version IL_44722.1 of this group appears in releases 2.0 to 2.0
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | break | 3 | 4 | 5 | 1-5 | 2-3 | 4-5 | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | ➜ | 4V88 | 0.4375 | 0 | A5 | LSU rRNA | U | 2862 | G | 2863 | * | U | 2826 | U | 2827 | G | 2828 | cWW | cWW | ||
| 2 | ➜ | 4V9F | 0.3752 | 0 | Major groove platform | 0 | LSU rRNA | U | 2528 | G | 2529 | * | U | 2492 | C | 2493 | G | 2494 | cWW | cWW | cHH |
| 3 | ➜ | 5AN9 | 0.3699 | 0 | N | LSU rRNA | U | 3195 | G | 3196 | * | U | 3159 | U | 3160 | G | 3161 | cWW | cWW | ||
| 4 | ➜ | 5FDU | 0.1444 | 0 | 1A | LSU rRNA | C | 2519 | G | 2520 | * | U | 2592 | G | 2593 | G | 2594 | cWW | cWW | cHH | |
| 5 | ➜ | 4V9F | 0.0000 | 0 | Major groove platform | 0 | LSU rRNA | C | 2542 | G | 2543 | * | U | 2615 | G | 2616 | G | 2617 | cWW | cWW | |
| 6 | ➜ | 4V88 | 0.0938 | 0 | A5 | LSU rRNA | C | 2876 | G | 2877 | * | U | 2949 | G | 2950 | G | 2951 | cWW | cWW | ||
| 7 | ➜ | 5FDU | 0.7179 | 1 | 1A | LSU rRNA | U | 1872 | G | 1873 | * | U | 1920 | G | 1921 | A | 1923 | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CG*UGG | 3 |
| UG*UUG | 2 |
| UG*UGAA | 1 |
| UG*UCG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| *G | 3 |
| *U | 2 |
| *GA | 1 |
| *C | 1 |
Release history
| Release | 2.0 |
|---|---|
| Date | 2017-04-24 |
| Status | New id, no parents |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- Major groove platform (2)
- Basepair signature
- cWW-cHH-cWW
- Heat map statistics
- Min 0.09 | Avg 0.36 | Max 0.82
Coloring options: