Motif IL_52903.1 Version IL_52903.1 of this group appears in releases 2.0 to 2.0
| #S | Loop id | PDB | Disc | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | break | 8 | 9 | 10 | 11 | 12 | 13 | 1-13 | 2-4 | 2-5 | 6-9 | 6-12 | 7-8 | 7-10 | 7-11 | 8-10 | 9-11 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | ➜ | 4U4U | 0.1411 | 7 | 5S rRNA | G | 21 | A | 22 | A | 23 | A | 24 | G | 25 | C | 26 | A | 27 | * | U | 53 | U | 54 | A | 55 | A | 56 | G | 57 | C | 58 | cWW | cWW | ncSW | cWW | ncSW | ncSW | ncSH | cSH | |||
| 2 | ➜ | 3J92 | 0.0000 | 7 | 5S rRNA | G | 21 | A | 22 | A | 23 | C | 24 | G | 25 | C | 26 | G | 27 | * | C | 52 | U | 53 | A | 54 | A | 55 | G | 56 | C | 57 | cWW | cWW | ncSW | cWW | cSW | cSH | cSH | ||||
| 3 | ➜ | 3J7Q | 0.1827 | 7 | 5S rRNA | G | 21 | A | 22 | A | 23 | C | 24 | G | 25 | C | 26 | G | 27 | * | C | 52 | U | 53 | A | 54 | A | 55 | G | 56 | C | 57 | cWW | ncWW | ncSW | cWW | cSW | ncSH | |||||
| 4 | ➜ | 3J9W | 0.8063 | BB | 5S rRNA | G | 21 | G | 22 | U | 23 | C | 24 | A | 25 | C | 26 | A | 27 | * | U | 53 | U | 54 | A | 55 | A | 56 | G | 57 | C | 58 | cWW | ncSH | ntSW | ncWW | ncSW | cWW | cSW | ncSH | cSH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GAACGCG*CUAAGC | 2 |
| GGUCACA*UUAAGC | 1 |
| GAAAGCA*UUAAGC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AACGC*UAAG | 2 |
| GUCAC*UAAG | 1 |
| AAAGC*UAAG | 1 |
Release history
| Release | 2.0 |
|---|---|
| Date | 2017-04-24 |
| Status | New id, no parents |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
- Basepair signature
- cWW-L-R-L-L-L-cWW-cSW-cSH-cWW
- Heat map statistics
- Min 0.14 | Avg 0.38 | Max 0.84
Coloring options: