Motif IL_57416.1 Version IL_57416.1 of this group appears in releases 2.0 to 2.0

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Annotation	Chain(s)	Standardized name		1		2		3	break		4		5	1-2	1-3	1-5	2-5	3-4
1	IL_1FJG_051➜	1FJG	0.5574	0		A	SSU rRNA	G	1274	A	1275	G	1276	*	C	1259	C	1260			cWW	ntHS	cWW
2	IL_3J7Y_034➜	3J7Y	0.1815	1		A	LSU rRNA	C	2548	A	2550	G	2551	*	C	2566	G	2567			cWW		cWW
3	IL_3J7P_102➜	3J7P	0.1925	1		5	LSU rRNA	C	3700	A	3702	G	3703	*	C	3749	G	3750			cWW		cWW
4	IL_4IOA_066➜	4IOA	0.1843	1		X	LSU rRNA	C	1829	G	1831	G	1832	*	C	1885	G	1886			cWW	ntHS	cWW
5	IL_4V8P_388➜	4V8P	0.1847	1		F1	LSU rRNA	C	2191	A	2193	G	2194	*	C	2240	G	2241			cWW		cWW
6	IL_5FDU_072➜	5FDU	0.1436	1		1A	LSU rRNA	C	1868	G	1870	G	1871	*	C	1924	G	1925			cWW	ntHS	cWW
7	IL_4V9F_066➜	4V9F	0.0000	1	Major groove outside cWW, minor groove, intercalation pocket	0	LSU rRNA	C	1893	A	1895	G	1896	*	C	1943	G	1944			cWW	ntHS	cWW
8	IL_5J7L_314➜	5J7L	0.1515	1	Major groove outside cWW, minor groove, intercalation pocket	DA	LSU rRNA	C	1837	G	1839	G	1840	*	C	1902	G	1903			cWW	tHS	cWW
9	IL_4V19_032➜	4V19	0.1697	1		A	LSU rRNA	C	878	A	880	G	881	*	C	896	G	897			cWW	ntHS	cWW
10	IL_3JAM_060➜	3JAM	0.3098	0		2	SSU rRNA	A	1233	C	1234	A	1235	*	U	1248	U	1249			cWW	ntHS	cWW
11	IL_3J7A_031➜	3J7A	0.3903	1		A	SSU rRNA	G	865	A	867	U	868	*	A	796	C	797			cWW		cWW
12	IL_4BTS_300➜	4BTS	0.3903	1		DA	SSU rRNA	G	785	A	787	U	788	*	A	730	C	731			cWW		cWW
13	IL_3Q1Q_003➜	3Q1Q	0.3729	2		B	RNase P RNA	G	103	A	106	G	107	*	C	209	C	210	ncSH		cWW	cWS	cWW
14	IL_4V4Q_184➜	4V4Q	0.4118	1		CA	SSU rRNA	U	70	A	72	C	73	*	G	97	A	98			cWW	cWS	cWW
15	IL_3J9W_038➜	3J9W	0.4931	2		AA	SSU rRNA	G	1003	A	1006	U	1007	*	A	1054	C	1055			cWW	cWS	cWW
16	IL_4V4Q_223➜	4V4Q	0.5150	2		CA	SSU rRNA	G	993	A	996	U	997	*	A	1044	C	1045			cWW	cWS	cWW
17	IL_1FJG_039➜	1FJG	0.4923	2		A	SSU rRNA	G	993	A	996	U	997	*	A	1044	C	1045			cWW	cWS	cWW
18	IL_4U4U_455➜	4U4U	0.6136	1		7	5S rRNA	G	49	A	51	G	52	*	C	28	C	29		ncSH	cWW	cWS	cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
CCAG*CG	5
CCGG*CG	3
GACAU*AC	3
GAAU*AC	2
GUAG*CC	1
ACA*UU	1
UAAC*GA	1
GACAG*CC	1
GAG*CC	1

Non-Watson-Crick part of the motif

Sequence	Counts
CA*	5
ACA*	4
AA*	3
CG*	3
UA*	1
C*	1
A*	1

Release history

Release	2.0
Date	2017-04-24
Status	New id, 2 parents

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Annotations: Major groove outside cWW, minor groove, intercalation pocket (2)
Basepair signature: cWW-cWS-cWW
Heat map statistics: Min 0.12 | Avg 0.41 | Max 0.69

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Coloring options: Nucleotide numbers

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