Motif IL_57416.1 Version IL_57416.1 of this group appears in releases 2.0 to 2.0
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | break | 4 | 5 | 1-5 | 2-5 | 3-4 | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_1FJG_051 | 1FJG | 0.5574 | 0 | Not an internal loop (H) | A | SSU rRNA | G | 1274 | A | 1275 | G | 1276 | * | C | 1259 | C | 1260 | ntHS | cWW | |
| 2 | IL_3J7Y_034 | 3J7Y | 0.1815 | 1 | A | LSU rRNA | C | 2548 | A | 2550 | G | 2551 | * | C | 2566 | G | 2567 | cWW | cWW | ||
| 3 | IL_3J7P_102 | 3J7P | 0.1925 | 1 | 5 | LSU rRNA | C | 3700 | A | 3702 | G | 3703 | * | C | 3749 | G | 3750 | cWW | cWW | ||
| 4 | IL_4IOA_066 | 4IOA | 0.1843 | 1 | Minor groove platform, major groove intercalation (H) | X | LSU rRNA | C | 1829 | G | 1831 | G | 1832 | * | C | 1885 | G | 1886 | cWW | cWW | |
| 5 | IL_4V8P_388 | 4V8P | 0.1847 | 1 | Major groove intercalation (H) | F1 | LSU rRNA | C | 2191 | A | 2193 | G | 2194 | * | C | 2240 | G | 2241 | cWW | cWW | |
| 6 | IL_5FDU_072 | 5FDU | 0.1436 | 1 | Minor groove platform, major groove intercalation (H) | 1A | LSU rRNA | C | 1868 | G | 1870 | G | 1871 | * | C | 1924 | G | 1925 | cWW | ntHS | cWW |
| 7 | IL_4V9F_066 | 4V9F | 0.0000 | 1 | Minor groove platform, major groove intercalation | 0 | LSU rRNA | C | 1893 | A | 1895 | G | 1896 | * | C | 1943 | G | 1944 | cWW | cWW | |
| 8 | IL_5J7L_314 | 5J7L | 0.1515 | 1 | Minor groove platform, major groove intercalation | DA | LSU rRNA | C | 1837 | G | 1839 | G | 1840 | * | C | 1902 | G | 1903 | cWW | ntHS | cWW |
| 9 | IL_4V19_032 | 4V19 | 0.1697 | 1 | Minor groove platform, major groove intercalation (H) | A | LSU rRNA | C | 878 | A | 880 | G | 881 | * | C | 896 | G | 897 | cWW | cWW | |
| 10 | IL_3JAM_060 | 3JAM | 0.3098 | 0 | 2 | SSU rRNA | A | 1233 | C | 1234 | A | 1235 | * | U | 1248 | U | 1249 | cWW | cWW | ||
| 11 | IL_3J7A_031 | 3J7A | 0.3903 | 1 | A | SSU rRNA | G | 865 | A | 867 | U | 868 | * | A | 796 | C | 797 | cWW | ncWS | cWW | |
| 12 | IL_4BTS_300 | 4BTS | 0.3903 | 1 | DA | SSU rRNA | G | 785 | A | 787 | U | 788 | * | A | 730 | C | 731 | cWW | ncWS | cWW | |
| 13 | IL_3Q1Q_003 | 3Q1Q | 0.3729 | 2 | B | RNase P class A | G | 103 | A | 106 | G | 107 | * | C | 209 | C | 210 | cWW | cWS | cWW | |
| 14 | IL_4V4Q_184 | 4V4Q | 0.4118 | 1 | Minor groove platform (H) | CA | SSU rRNA | U | 70 | A | 72 | C | 73 | * | G | 97 | A | 98 | cWW | cWS | cWW |
| 15 | IL_3J9W_038 | 3J9W | 0.4931 | 2 | Minor groove platform (H) | AA | SSU rRNA | G | 1003 | A | 1006 | U | 1007 | * | A | 1054 | C | 1055 | cWW | ncWS | cWW |
| 16 | IL_4V4Q_223 | 4V4Q | 0.5150 | 2 | CA | SSU rRNA | G | 993 | A | 996 | U | 997 | * | A | 1044 | C | 1045 | cWW | cWS | cWW | |
| 17 | IL_1FJG_039 | 1FJG | 0.4923 | 2 | Minor groove platform (H) | A | SSU rRNA | G | 993 | A | 996 | U | 997 | * | A | 1044 | C | 1045 | cWW | cWS | cWW |
| 18 | IL_4U4U_455 | 4U4U | 0.6136 | 1 | Minor groove platform (H) | 7 | 5S rRNA | G | 49 | A | 51 | G | 52 | * | C | 28 | C | 29 | cWW | ncWS | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CCAG*CG | 5 |
| CCGG*CG | 3 |
| GACAU*AC | 3 |
| GAAU*AC | 2 |
| GAG*CC | 1 |
| ACA*UU | 1 |
| GACAG*CC | 1 |
| UAAC*GA | 1 |
| GUAG*CC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| CA* | 5 |
| ACA* | 4 |
| CG* | 3 |
| AA* | 3 |
| A* | 1 |
| C* | 1 |
| UA* | 1 |
Release history
| Release | 2.0 |
|---|---|
| Date | 2017-04-24 |
| Status | New id, 2 parents |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (7)
- Minor groove platform (H) (4)
- Minor groove platform, major groove intercalation (H) (3)
- Minor groove platform, major groove intercalation (2)
- Not an internal loop (H) (1)
- Major groove intercalation (H) (1)
- Basepair signature
- cWW-cWS-cWW
- Heat map statistics
- Min 0.12 | Avg 0.41 | Max 0.69
Coloring options: