Motif IL_58972.1 Version IL_58972.1 of this group appears in releases 2.0 to 2.0
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | break | 3 | 4 | 5 | 6 | 1-6 | 2-3 | 2-5 | 3-4 | 3-5 | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | ➜ | 5A2Q | 0.2369 | 2 | 2 | SSU rRNA | A | 1402 | A | 1405 | * | U | 1441 | U | 1442 | C | 1443 | U | 1444 | cWW | cWW | cSH | cSH | ||
| 2 | ➜ | 4V88 | 0.0000 | 2 | Minor groove platform | A6 | SSU rRNA | A | 1345 | A | 1348 | * | U | 1377 | U | 1378 | C | 1379 | U | 1380 | cWW | cWW | cSH | cSH | |
| 3 | ➜ | 4TS0 | 0.6323 | 2 | X+Y | Spinach RNA aptamer, bimolecular construct | G | 14 | A | 17 | * | U | 82 | A | 83 | A | 84 | C | 85 | cWW | cWW | cSW | ncSH | ||
| 4 | ➜ | 4V8P | 0.9387 | 0 | F1 | LSU rRNA | A | 1062 | C | 1063 | * | G | 1039 | A | 1040 | C | 1041 | U | 1042 | cWW | cWW | ncSH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| AC*GACU | 1 |
| GAAA*UAAC | 1 |
| AAUA*UUCU | 1 |
| ACUA*UUCU | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| *AC | 1 |
| AA*AA | 1 |
| AU*UC | 1 |
| CU*UC | 1 |
Release history
| Release | 2.0 |
|---|---|
| Date | 2017-04-24 |
| Status | New id, no parents |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- Minor groove platform (1)
- Basepair signature
- cWW-cSH-R-cWW
- Heat map statistics
- Min 0.24 | Avg 0.54 | Max 0.95
Coloring options: