Motif IL_61975.1 Version IL_61975.1 of this group appears in releases 2.0 to 2.0
| #S | Loop id | PDB | Disc | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | break | 7 | 8 | 9 | 1-9 | 2-6 | 3-5 | 6-7 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | ➜ | 4BTS | 0.2413 | DA | SSU rRNA | U | 57 | G | 58 | C | 59 | C | 60 | A | 61 | G | 62 | * | C | 83 | U | 84 | G | 85 | cWW | cWH | cWW | ||
| 2 | ➜ | 4V88 | 0.2252 | A6 | SSU rRNA | U | 58 | C | 59 | U | 60 | A | 61 | A | 62 | G | 63 | * | C | 87 | U | 88 | G | 89 | cWW | ncWH | tSH | cWW | |
| 3 | ➜ | 5A2Q | 0.0000 | 2 | SSU rRNA | U | 57 | C | 58 | U | 59 | A | 60 | A | 61 | G | 62 | * | C | 86 | U | 87 | G | 88 | cWW | ncWH | ntSH | cWW | |
| 4 | ➜ | 3JAM | 0.2643 | 2 | SSU rRNA | U | 58 | C | 59 | U | 60 | A | 61 | A | 62 | G | 63 | * | C | 87 | U | 88 | G | 89 | cWW | cWH | ntSH | cWW | |
| 5 | ➜ | 3J7P | 0.3915 | S2 | SSU rRNA | U | 57 | C | 58 | U | 59 | A | 60 | A | 61 | G | 62 | * | C | 86 | U | 87 | G | 88 | cWW | ncWH | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UCUAAG*CUG | 4 |
| UGCCAG*CUG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| CUAA*U | 4 |
| GCCA*U | 1 |
Release history
| Release | 2.0 |
|---|---|
| Date | 2017-04-24 |
| Status | New id, no parents |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
- Basepair signature
- cWW-R-cWH-L-L-L-cWW
- Heat map statistics
- Min 0.22 | Avg 0.25 | Max 0.39
Coloring options: