Description:
GAAA loop receptor "platform" motif
Basepair signature:
cWW-R-tWH-cSH-cWW
Free text annotation:
One motif!
Intraclusteral linkage
Min 0.16 | Avg 0.38 | Max 0.99
Help
#D - ordering by discrepancy relative to the exemplar, #S - ordering by similarity (same as in the heat map). More
#D#SLoop idPDBDisc 1 2 3 4 5break 6 7 8 91-81-92-72-83-43-74-74-85-65-8
163T4B0.0000C2U3A4A5G6*U17A18U19G20cWWtWHcSHncWWcWW
254WZJ0.1648C56U57A58A59G60*U46A47U48G49cWWntWHcSHncWWcWWncSW
341X8W0.2014C223U224A225A226G227*U247A248U249G250cWWtWHncWWcWW
471U6B0.2157C61U62A63A64G65*U80A81U82G83cWWtWHcSHncWWcWW
521KXK0.2674C15U16A17A18G19*U54A55U56G57cWWtWHcSHcWW
631NBS0.2887C146U147A148C149G150*U159A160U161G162cWWntWHcSHcWW
714R0D0.3278C532U533A534A535G536*U518A519U520G521cWWntWHcSHcWW
883J7P0.8506G4768G4769U4770C4771C4772*G4863U4864C4865C4866ncWWcWWncWWncWWntHScWW

3D structures

Complete motif including flanking bases
SequenceCounts
CUAAG*UAUG6
GGUCC*GUCC1
CUACG*UAUG1
Non-Watson-Crick part of the motif
SequenceCounts
UAA*AU6
GUC*UC1
UAC*AU1

Release history

Release2.0
Date2017-04-24
StatusNew id, 1 parent

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Coloring options:

Mutual discrepancy heat map legend: