Motif IL_81237.1 Version IL_81237.1 of this group appears in releases 2.0 to 2.0
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | 1 | 2 | 3 | 4 | 5 | break | 6 | 7 | 8 | 9 | 1-9 | 2-7 | 3-4 | 3-7 | 4-8 | 5-6 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_4R0D_017 | 4R0D | 0.3278 | 0 | Receptor of 11-nt loop-receptor motif | A | C | 532 | U | 533 | A | 534 | A | 535 | G | 536 | * | U | 518 | A | 519 | U | 520 | G | 521 | ncWW | ntWH | cSH | cWW | ||
| 2 | IL_1KXK_002 | 1KXK | 0.2674 | 0 | Receptor of 11-nt loop-receptor motif | A | C | 15 | U | 16 | A | 17 | A | 18 | G | 19 | * | U | 54 | A | 55 | U | 56 | G | 57 | cWW | tWH | cSH | cWW | ||
| 3 | IL_1NBS_008 | 1NBS | 0.2887 | 0 | Receptor of 11-nt loop-receptor motif | B | C | 146 | U | 147 | A | 148 | C | 149 | G | 150 | * | U | 159 | A | 160 | U | 161 | G | 162 | cWW | tWH | ncSH | cWW | ||
| 4 | IL_1X8W_007 | 1X8W | 0.2014 | 0 | A | C | 223 | U | 224 | A | 225 | A | 226 | G | 227 | * | U | 247 | A | 248 | U | 249 | G | 250 | cWW | ncWW | |||||
| 5 | IL_4WZJ_036 | 4WZJ | 0.1648 | 0 | YYYY | C | 56 | U | 57 | A | 58 | A | 59 | G | 60 | * | U | 46 | A | 47 | U | 48 | G | 49 | cWW | tWH | cSH | cWW | |||
| 6 | IL_3T4B_002 | 3T4B | 0.0000 | 0 | Receptor of 11-nt loop-receptor motif | A | C | 2 | U | 3 | A | 4 | A | 5 | G | 6 | * | U | 17 | A | 18 | U | 19 | G | 20 | cWW | tWH | cSH | cWW | cWW | |
| 7 | IL_1U6B_003 | 1U6B | 0.2157 | 0 | Receptor of 11-nt loop-receptor motif | B | C | 61 | U | 62 | A | 63 | A | 64 | G | 65 | * | U | 80 | A | 81 | U | 82 | G | 83 | cWW | tWH | cSH | ncWW | cWW | |
| 8 | IL_3J7P_140 | 3J7P | 0.8506 | 0 | 5 | G | 4768 | G | 4769 | U | 4770 | C | 4771 | C | 4772 | * | G | 4863 | U | 4864 | C | 4865 | C | 4866 | cWW | ncWB | ncwW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CUAAG*UAUG | 6 |
| CUACG*UAUG | 1 |
| GGUCC*GUCC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UAA*AU | 6 |
| UAC*AU | 1 |
| GUC*UC | 1 |
Release history
| Release | 2.0 |
|---|---|
| Date | 2017-04-24 |
| Status | New id, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- Receptor of 11-nt loop-receptor motif (5)
- (3)
- Basepair signature
- cWW-R-tWH-cSH-cWW
- Heat map statistics
- Min 0.16 | Avg 0.38 | Max 0.99
Coloring options: