Motif IL_92753.1 Version IL_92753.1 of this group appears in releases 2.0 to 2.0
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | break | 6 | 7 | 8 | 9 | 10 | 1-10 | 2-9 | 3-8 | 4-7 | 5-6 | 5-7 | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | ➜ | 4V8P | 0.3337 | 1 | F1 | LSU rRNA | U | 1718 | U | 1719 | A | 1720 | A | 1721 | C | 1722 | * | G | 1772 | G | 1773 | C | 1774 | A | 1775 | A | 1777 | cWW | ntWW | tHH | tHS | cWW | ||
| 2 | ➜ | 4V91 | 0.0926 | 1 | 1 | LSU rRNA | U | 1694 | U | 1695 | A | 1696 | A | 1697 | C | 1698 | * | G | 1747 | G | 1748 | A | 1749 | A | 1750 | A | 1752 | cWW | tWH | tHH | tHS | cWW | ||
| 3 | ➜ | 4V88 | 0.0000 | 1 | A5 | LSU rRNA | U | 1694 | U | 1695 | A | 1696 | A | 1697 | C | 1698 | * | G | 1747 | G | 1748 | A | 1749 | A | 1750 | A | 1752 | cWW | tWH | tHH | tHS | cWW | ||
| 4 | ➜ | 3J79 | 0.3539 | 1 | A | LSU rRNA | U | 1849 | U | 1850 | A | 1851 | C | 1852 | C | 1853 | * | G | 1967 | C | 1968 | A | 1969 | A | 1970 | A | 1972 | cWW | tWH | ntHW | tHS | cWW | ncWS |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UUAAC*GGAAGA | 2 |
| UUACC*GCAAUA | 1 |
| UUAAC*GGCAGA | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UAA*GAAG | 2 |
| UAC*CAAU | 1 |
| UAA*GCAG | 1 |
Release history
| Release | 2.0 |
|---|---|
| Date | 2017-04-24 |
| Status | New id, no parents |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
- Basepair signature
- cWW-tWH-tHH-tHS-cWW
- Heat map statistics
- Min 0.09 | Avg 0.24 | Max 0.45
Coloring options: