BGSU RNA Site //

Equivalence class NR_1.5_31074.1 Obsolete

#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodÅDate
11J8G|1|D (rep)5'-R(*UP*GP*GP*GP*GP*U)-3'X-ray Analysis of a RNA Tetraplex r(uggggu)4 at Ultra-High ResolutionX-ray diffraction0.612001-11-23
24RKV|1|ARNA (5'-R(*UP*GP*GP*GP*GP*U)-3')synthetic constructSyntheticStructural variations and solvent structure of UGGGGU quadruplexes stabilized by Sr2+ ionsX-ray diffraction0.882014-11-19
34RNE|1|ARNA (5'-R(*UP*GP*GP*GP*GP*U)-3')synthetic constructSyntheticStructural variations and solvent structure of UGGGGU quadruplexes stabilized by Sr2+ ionsX-ray diffraction1.012014-11-19
44RNE|1|FRNA (5'-R(*UP*GP*GP*GP*GP*U)-3')synthetic constructSyntheticStructural variations and solvent structure of UGGGGU quadruplexes stabilized by Sr2+ ionsX-ray diffraction1.012014-11-19
51J8G|1|A5'-R(*UP*GP*GP*GP*GP*U)-3'X-ray Analysis of a RNA Tetraplex r(uggggu)4 at Ultra-High ResolutionX-ray diffraction0.612001-11-23
64RJ1|1|ARNA (5'-R(*UP*GP*GP*GP*GP*U)-3')synthetic constructSyntheticStructural variations and solvent structure of UGGGGU quadruplexes stabilized by Sr2+ ionsX-ray diffraction0.922014-11-12
74RNE|1|BRNA (5'-R(*UP*GP*GP*GP*GP*U)-3')synthetic constructSyntheticStructural variations and solvent structure of UGGGGU quadruplexes stabilized by Sr2+ ionsX-ray diffraction1.012014-11-19
81J8G|1|C5'-R(*UP*GP*GP*GP*GP*U)-3'X-ray Analysis of a RNA Tetraplex r(uggggu)4 at Ultra-High ResolutionX-ray diffraction0.612001-11-23
94XK0|1|CRNA (5'-(*UP*GP*GP*GP*GP*U)-3')synthetic constructSyntheticCrystal structure of a tetramolecular RNA G-quadruplex in potassiumX-ray diffraction1.082015-02-11
104RNE|1|CRNA (5'-R(*UP*GP*GP*GP*GP*U)-3')synthetic constructSyntheticStructural variations and solvent structure of UGGGGU quadruplexes stabilized by Sr2+ ionsX-ray diffraction1.012014-11-19
114RNE|1|DRNA (5'-R(*UP*GP*GP*GP*GP*U)-3')synthetic constructSyntheticStructural variations and solvent structure of UGGGGU quadruplexes stabilized by Sr2+ ionsX-ray diffraction1.012014-11-19
124RNE|1|ERNA (5'-R(*UP*GP*GP*GP*GP*U)-3')synthetic constructSyntheticStructural variations and solvent structure of UGGGGU quadruplexes stabilized by Sr2+ ionsX-ray diffraction1.012014-11-19
134RNE|1|GRNA (5'-R(*UP*GP*GP*GP*GP*U)-3')synthetic constructSyntheticStructural variations and solvent structure of UGGGGU quadruplexes stabilized by Sr2+ ionsX-ray diffraction1.012014-11-19
144RNE|1|HRNA (5'-R(*UP*GP*GP*GP*GP*U)-3')synthetic constructSyntheticStructural variations and solvent structure of UGGGGU quadruplexes stabilized by Sr2+ ionsX-ray diffraction1.012014-11-19

Release history

Release2.932.942.952.962.972.982.992.1002.1012.1022.1032.1042.1052.1062.1072.1082.1092.1102.1112.1122.1132.1142.1152.1162.1172.1182.1192.1202.1212.1222.1232.1242.1252.1262.1272.1282.1292.1302.1312.1322.1332.1342.1352.1362.1372.1382.1392.1402.1412.1422.1432.1442.1452.1462.1472.1482.1492.1502.1512.1522.1532.1542.1552.1562.1572.158
Date2016-09-162016-09-232016-09-302016-10-072016-10-142016-10-212016-10-282016-11-042016-11-112016-11-182016-11-252016-12-022016-12-092016-12-162016-12-232016-12-302017-01-062017-01-132017-01-202017-01-272017-02-032017-02-102017-02-172017-02-242017-03-032017-03-102017-03-172017-03-242017-03-312017-04-112017-04-152017-04-262017-04-292017-05-092017-05-152017-05-202017-05-272017-06-072017-06-112017-06-212017-06-242017-06-282017-07-042017-07-102017-07-152017-07-262017-07-312017-08-052017-08-122017-08-192017-08-262017-09-032017-09-092017-09-162017-09-232017-09-302017-10-072017-10-142017-10-212017-10-282017-11-032017-11-102017-11-172017-11-242017-12-012017-12-08

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent
NR_1.5_31074.1NR_1.5_74981.12.93(14) 4RNE|1|C, 4RNE|1|B, 4RNE|1|A, 4XK0|1|C, 4RJ1|1|A, 4RNE|1|G, 1J8G|1|D, 4RNE|1|F, 1J8G|1|C, 4RNE|1|E, 1J8G|1|A, 4RNE|1|D, 4RKV|1|A, 4RNE|1|H(0) (4) 4RKV|1|B, 4RJ1|1|B, 1J8G|1|B, 4XK0|1|A

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child
NR_1.5_31074.1NR_1.5_31074.23.0(13) 4RNE|1|H, 4RNE|1|A, 4RNE|1|C, 1J8G|1|A, 4RNE|1|E, 1J8G|1|D, 4RNE|1|G, 4RKV|1|A, 4RNE|1|B, 4RNE|1|D, 1J8G|1|C, 4RNE|1|F, 4RJ1|1|A(1) 4XK0|1|C(0)

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#SPDBTitleMethodResolutionLength
11J8G|1|DX-ray Analysis of a RNA Tetraplex r(uggggu)4 at Ultra-High ResolutionX-RAY DIFFRACTION0.616
24RJ1|1|AStructural variations and solvent structure of UGGGGU quadruplexes stabilized by Sr2+ ionsX-RAY DIFFRACTION0.926
31J8G|1|CX-ray Analysis of a RNA Tetraplex r(uggggu)4 at Ultra-High ResolutionX-RAY DIFFRACTION0.616
44RNE|1|GStructural variations and solvent structure of UGGGGU quadruplexes stabilized by Sr2+ ionsX-RAY DIFFRACTION1.016
54RNE|1|HStructural variations and solvent structure of UGGGGU quadruplexes stabilized by Sr2+ ionsX-RAY DIFFRACTION1.016
64RNE|1|EStructural variations and solvent structure of UGGGGU quadruplexes stabilized by Sr2+ ionsX-RAY DIFFRACTION1.016
74RNE|1|FStructural variations and solvent structure of UGGGGU quadruplexes stabilized by Sr2+ ionsX-RAY DIFFRACTION1.019
84RNE|1|AStructural variations and solvent structure of UGGGGU quadruplexes stabilized by Sr2+ ionsX-RAY DIFFRACTION1.019
94RNE|1|CStructural variations and solvent structure of UGGGGU quadruplexes stabilized by Sr2+ ionsX-RAY DIFFRACTION1.016
104RKV|1|AStructural variations and solvent structure of UGGGGU quadruplexes stabilized by Sr2+ ionsX-RAY DIFFRACTION0.8810
114RNE|1|DStructural variations and solvent structure of UGGGGU quadruplexes stabilized by Sr2+ ionsX-RAY DIFFRACTION1.016
124RNE|1|BStructural variations and solvent structure of UGGGGU quadruplexes stabilized by Sr2+ ionsX-RAY DIFFRACTION1.016
131J8G|1|AX-ray Analysis of a RNA Tetraplex r(uggggu)4 at Ultra-High ResolutionX-RAY DIFFRACTION0.616
144XK0|1|CCrystal structure of a tetramolecular RNA G-quadruplex in potassiumX-RAY DIFFRACTION1.086
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