Equivalence class NR_1.5_97195.1 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 4MSR|1|A+ 4MSR|1|B (rep) | RNA 10mer duplex with six 2'-5'-linkages | RNA 10mer duplex with six 2'-5'-linkages | X-ray diffraction | 1.2 | 2014-02-12 | ||||
| 2 | 5TDJ|1|A | RNA (5'-R(*CP*CP*GP*GP*CP*GP*CP*CP*GP*G)-3') | synthetic construct | Synthetic | RNA decamer duplex with four 2'-5'-linkages | X-ray diffraction | 1.5 | 2017-01-11 | ||
| 3 | 4MS9|1|A | Native RNA duplex 10mer | Native RNA-10mer Structure: ccggcgccgg | X-ray diffraction | 1.32 | 2014-02-12 | ||||
| 4 | 5TDK|1|A+ 5TDK|1|B | RNA (5'-R(*CP*CP*GP*GP*CP*GP*CP*CP*GP*G)-3') | synthetic construct | Synthetic | RNA decamer duplex with eight 2'-5'-linkages | X-ray diffraction | 1.43 | 2017-01-11 | ||
| 5 | 5TDJ|1|B | RNA (5'-R(*CP*CP*GP*GP*CP*GP*CP*CP*GP*G)-3') | synthetic construct | Synthetic | RNA decamer duplex with four 2'-5'-linkages | X-ray diffraction | 1.5 | 2017-01-11 |
Release history
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|---|---|---|---|---|
| NR_1.5_97195.1 | NR_1.5_61679.1 | 2.110 | (2) 4MSR|1|A+4MSR|1|B, 4MS9|1|A | (3) 5TDK|1|A+5TDK|1|B, 5TDJ|1|B, 5TDJ|1|A | (0) |
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|---|---|---|---|---|
| NR_1.5_97195.1 | NR_1.5_47763.1 | 2.124 | (5) 4MS9|1|A, 4MSR|1|A+4MSR|1|B, 5TDJ|1|A, 5TDJ|1|B, 5TDK|1|A+5TDK|1|B | (0) | (0) |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|
| 1 | 4MS9|1|A | Native RNA-10mer Structure: ccggcgccgg | X-RAY DIFFRACTION | 1.32 | 10 |
| 2 | 5TDJ|1|A | RNA decamer duplex with four 2'-5'-linkages | X-RAY DIFFRACTION | 1.5 | 10 |
| 3 | 5TDJ|1|B | RNA decamer duplex with four 2'-5'-linkages | X-RAY DIFFRACTION | 1.5 | 10 |
| 4 | 5TDK|1|A+5TDK|1|B | RNA decamer duplex with eight 2'-5'-linkages | X-RAY DIFFRACTION | 1.43 | 10 |
| 5 | 4MSR|1|A+4MSR|1|B | RNA 10mer duplex with six 2'-5'-linkages | X-RAY DIFFRACTION | 1.2 | 12 |