#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. ÅDate
15UED|1|A+ 5UED|1|B (rep)RNA (5'-R(*(LCC)P*(LCC)P*(LCC)P*GP*AP*CP*UP*UP*AP*AP*GP*UP*CP*G)-3')synthetic constructRNA primer-template complex with guanosine dinucleotide ligand G(5')pp(5')GX-ray diffraction1.52017-07-05
26C8J|1|A+ 6C8J|1|BRNA (5'-R(*(LCC)P*(LCC)P*(LCC)P*(LCG)P*AP*CP*UP*UP*AP*AP*GP*UP*CP*G)-3')synthetic constructRNA-activated 2-AIpG monomer complex, 15 min soakingX-ray diffraction1.52018-05-30
37KUP|1|A+ 7KUP|1|B5'-R((LCC)P*(LCC)P*(LCC)P*(LCG)P*AP*CP*UP*UP*AP*AP*GP*UP*CP*(OMG))-3'synthetic construct2'-OMe modification at 3' end of RNA primer complex with guanosine dinucleotide ligand G(5')ppp(5')GX-ray diffraction1.442021-09-08
47KUK|1|A+ 7KUK|1|BRNA (5'-R(*(LKC)P*(LCC)P*(LCC)P*(LCG)P*AP*CP*UP*UP*AP*AP*GP*UP*CP*G)-3')synthetic constructHigh resolution RNA primer complex with guanosine dinucleotide ligand G(5')ppp(5')GX-ray diffraction1.672021-09-08
57KUM|1|A+ 7KUM|1|B5'-R((LCC)P*(LCC)P*(LCC)P*(LCG)P*AP*CP*UP*UP*AP*AP*GP*UP*CP*(LCG)-3'synthetic constructLNA modification at 3' end of RNA primer complex with guanosine dinucleotide ligand G(5')ppp(5')GX-ray diffraction1.7142021-09-08
67KUL|1|A+ 7KUL|1|BDNA/RNA (5'-R(*(LKC)P*(LCC)P*(LCC)P*(LCG)P*AP*CP*UP*UP*AP*AP*GP*UP*C)-D(P*G)-3')synthetic constructDNA modification at 3' end of RNA primer complex with guanosine dinucleotide ligand G(5')ppp(5')GX-ray diffraction1.642021-09-08
76C8D|1|A+ 6C8D|1|BRNA (5'-R(*(LCC)P*(LCC)P*(LCC)P*(LCG)P*AP*CP*UP*UP*AP*AP*GP*UP*CP*G)-3')synthetic constructRNA-dGMP complex with Mg ionX-ray diffraction1.922018-05-30
86C8I|1|A+ 6C8I|1|BRNA (5'-R(*(LCC)P*(LCC)P*(LCC)P*(LCG)P*AP*CP*UP*UP*AP*AP*GP*UP*CP*G)-3')synthetic constructRNA-activated 2-AIpG monomer complex, 5 min soakingX-ray diffraction1.772018-05-30
95UEE|1|A+ 5UEE|1|BRNA (5'-R(*(LCC)P*(LCC)P*(LCC)P*GP*AP*CP*UP*UP*AP*AP*GP*UP*CP*G)-3')synthetic constructRNA primer-template complex with guanosine dinucleotide ligand G(5')ppp(5')GX-ray diffraction1.92017-07-05
106C8E|1|A+ 6C8E|1|BRNA (5'-R(*(LCC)P*(LCC)P*(LCC)P*(LCG)P*AP*CP*UP*UP*AP*AP*GP*UP*CP*G)-3')synthetic constructRNA-imidazolium-bridged intermediate complex, 4h soakingX-ray diffraction1.82018-05-30
116OWL|1|ARNA (5'-R(*(LCC)P*(LCC)P*(LCC)P*(LCG)P*AP*CP*UP*UP*AP*AP*GP*UP*CP*R)-3')synthetic constructRNA oligonucleotides with 3'-arabino guanosine co-crystallized with GMPX-ray diffraction22020-02-26

Release history

Release3.1953.1963.1973.1983.1993.2003.2013.2023.2033.2043.2053.2063.2073.2083.2093.2103.2113.2123.2133.2143.2153.2163.2173.2183.2193.2203.2213.2223.2233.2243.2253.2263.2273.2283.2293.2303.2313.2323.2333.2343.2353.2363.2373.2383.2393.2403.2413.2423.2433.2443.2453.2463.2473.2483.2493.2503.2513.2523.2533.2543.2553.2563.2573.2583.2593.2603.2613.2623.2633.2643.2653.2663.2673.2683.2693.2703.2713.2723.2733.2743.2753.2763.2773.2783.2793.2803.2813.2823.2833.284
Date2021-09-082021-09-152021-09-222021-09-292021-10-062021-10-132021-10-202021-10-272021-11-032021-11-102021-11-172021-11-242021-12-012021-12-082021-12-152021-12-222021-12-292022-01-052022-01-122022-01-192022-01-262022-02-022022-02-092022-02-162022-02-232022-03-022022-03-092022-03-162022-03-232022-03-302022-04-062022-04-132022-04-202022-04-272022-05-042022-05-112022-05-182022-05-252022-06-012022-06-082022-06-152022-06-222022-06-292022-07-062022-07-132022-07-202022-07-272022-08-032022-08-102022-08-172022-08-242022-08-312022-09-072022-09-142022-09-212022-09-282022-10-052022-10-122022-10-192022-10-262022-11-022022-11-092022-11-162022-11-232022-11-302022-12-072022-12-142022-12-212022-12-282023-01-042023-01-112023-01-182023-01-252023-02-012023-02-082023-02-152023-02-222023-03-012023-03-082023-03-152023-03-222023-03-292023-04-052023-04-122023-04-192023-04-262023-05-032023-05-102023-05-172023-05-24

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#SPDBTitleMethodResolutionLength
16C8I|1|A+6C8I|1|BRNA-activated 2-AIpG monomer complex, 5 min soakingX-RAY DIFFRACTION1.7710
25UED|1|A+5UED|1|BRNA primer-template complex with guanosine dinucleotide ligand G(5')pp(5')GX-RAY DIFFRACTION1.511
35UEE|1|A+5UEE|1|BRNA primer-template complex with guanosine dinucleotide ligand G(5')ppp(5')GX-RAY DIFFRACTION1.911
47KUM|1|A+7KUM|1|BLNA modification at 3' end of RNA primer complex with guanosine dinucleotide ligand G(5')ppp(5')GX-RAY DIFFRACTION1.7149
57KUK|1|A+7KUK|1|BHigh resolution RNA primer complex with guanosine dinucleotide ligand G(5')ppp(5')GX-RAY DIFFRACTION1.6710
67KUP|1|A+7KUP|1|B2'-OMe modification at 3' end of RNA primer complex with guanosine dinucleotide ligand G(5')ppp(5')GX-RAY DIFFRACTION1.449
77KUL|1|A+7KUL|1|BDNA modification at 3' end of RNA primer complex with guanosine dinucleotide ligand G(5')ppp(5')GX-RAY DIFFRACTION1.649
86C8D|1|A+6C8D|1|BRNA-dGMP complex with Mg ionX-RAY DIFFRACTION1.9210
96C8J|1|A+6C8J|1|BRNA-activated 2-AIpG monomer complex, 15 min soakingX-RAY DIFFRACTION1.510
106C8E|1|A+6C8E|1|BRNA-imidazolium-bridged intermediate complex, 4h soakingX-RAY DIFFRACTION1.810
116OWL|1|ARNA oligonucleotides with 3'-arabino guanosine co-crystallized with GMPX-RAY DIFFRACTION29
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