#PDBTitleRNA source organismCompoundsMethodResolutionDate
14U3L|1|A+4U3L|1|B (rep)octameric RNA duplex co-crystallized in calcium(II)chlorideRNA (5'-R(*UP*CP*GP*UP*AP*CP*GP*A)-3'), RNA (5'-R(*UP*CP*GP*UP*AP*CP*GP*A)-3')X-RAY DIFFRACTION1.482015-07-29
24U78|1|A+4U78|1|BOctameric RNA duplex soaked in copper(II)chlorideRNA (5'-R(*UP*CP*GP*UP*AP*CP*GP*A)-3'), RNA (5'-R(*UP*CP*GP*UP*AP*CP*GP*A)-3')X-RAY DIFFRACTION1.52015-08-26
34U3P|1|A+4U3P|1|BOctameric RNA duplex co-crystallized with strontium(II)chlorideRNA (5'-R(*UP*CP*GP*UP*AP*CP*GP*A)-3'), RNA (5'-R(*UP*CP*GP*UP*AP*CP*GP*A)-3')X-RAY DIFFRACTION1.872015-07-29
44U3R|1|A+4U3R|1|BOctameric RNA duplex co-crystallized with cobalt(II)chlorideRNA (5'-R(*UP*CP*GP*UP*AP*CP*GP*A)-3'), RNA (5'-R(*UP*CP*GP*UP*AP*CP*GP*A)-3')X-RAY DIFFRACTION1.72015-07-29
54U47|1|A+4U47|1|BOctameric RNA duplex soaked in terbium(III)chlorideRNA (5'-R(*UP*CP*GP*UP*AP*CP*GP*A)-3'), RNA (5'-R(*UP*CP*GP*UP*AP*CP*GP*A)-3')X-RAY DIFFRACTION1.952015-08-05
64U3O|1|A+4U3O|1|BOctameric RNA duplex soaked in manganese(II)chlorideRNA (5'-R(*UP*CP*GP*UP*AP*CP*GP*A)-3'), RNA (5'-R(*UP*CP*GP*UP*AP*CP*GP*A)-3')X-RAY DIFFRACTION1.82015-07-29

Release history

Release2.382.392.402.412.422.432.442.452.462.472.482.492.502.512.522.532.542.552.562.572.582.592.602.612.622.632.642.652.662.672.682.692.702.712.722.732.742.752.762.772.782.792.802.812.822.832.842.852.862.872.882.892.902.912.922.932.942.952.962.972.982.992.1002.1012.1022.1032.1042.1052.1062.1072.1082.1092.1102.1112.1122.1132.1142.1152.1162.1172.1182.1192.1202.1212.1222.1232.1242.1252.1262.1272.1282.1292.1302.1312.1322.1332.1342.1352.1362.1372.1382.1392.1402.1412.1422.1432.1442.1452.1462.1472.1482.1492.1502.1512.1522.1532.1542.1552.1562.1572.1583.03.13.23.33.43.53.63.73.83.93.103.11
Date2015-08-282015-09-042015-09-112015-09-182015-09-252015-10-022015-10-092015-10-162015-10-232015-10-302015-11-062015-11-132015-11-202015-11-272015-12-042015-12-112015-12-182015-12-252016-01-012016-01-082016-01-152016-01-222016-01-292016-02-052016-02-122016-02-192016-02-262016-03-042016-03-112016-03-182016-03-252016-04-012016-04-082016-04-152016-04-222016-04-292016-05-062016-05-132016-05-202016-05-272016-06-032016-06-102016-06-172016-06-242016-07-012016-07-082016-07-152016-07-222016-07-292016-08-052016-08-122016-08-192016-08-262016-09-022016-09-092016-09-162016-09-232016-09-302016-10-072016-10-142016-10-212016-10-282016-11-042016-11-112016-11-182016-11-252016-12-022016-12-092016-12-162016-12-232016-12-302017-01-062017-01-132017-01-202017-01-272017-02-032017-02-102017-02-172017-02-242017-03-032017-03-102017-03-172017-03-242017-03-312017-04-112017-04-152017-04-262017-04-292017-05-092017-05-152017-05-202017-05-272017-06-072017-06-112017-06-212017-06-242017-06-282017-07-042017-07-102017-07-152017-07-262017-07-312017-08-052017-08-122017-08-192017-08-262017-09-032017-09-092017-09-162017-09-232017-09-302017-10-072017-10-142017-10-212017-10-282017-11-032017-11-102017-11-172017-11-242017-12-012017-12-082017-12-152017-12-222017-12-292018-01-052018-01-122018-01-192018-01-262018-02-022018-02-092018-02-162018-02-232018-03-01

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent
NR_2.0_04974.3NR_all_04974.22.38(5) 4U47|1|A+4U47|1|B, 4U3R|1|A+4U3R|1|B, 4U3P|1|A+4U3P|1|B, 4U3O|1|A+4U3O|1|B, 4U3L|1|A+4U3L|1|B(1) 4U78|1|A+4U78|1|B(0)

Children

This classDescendant classesRelease idIntersectionOnly in this classAdded to child

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#SPDBTitleMethodResolutionLength
14U3O|1|A+4U3O|1|BOctameric RNA duplex soaked in manganese(II)chlorideX-RAY DIFFRACTION1.88
24U3P|1|A+4U3P|1|BOctameric RNA duplex co-crystallized with strontium(II)chlorideX-RAY DIFFRACTION1.878
34U47|1|A+4U47|1|BOctameric RNA duplex soaked in terbium(III)chlorideX-RAY DIFFRACTION1.958
44U78|1|A+4U78|1|BOctameric RNA duplex soaked in copper(II)chlorideX-RAY DIFFRACTION1.58
54U3R|1|A+4U3R|1|BOctameric RNA duplex co-crystallized with cobalt(II)chlorideX-RAY DIFFRACTION1.78
64U3L|1|A+4U3L|1|Boctameric RNA duplex co-crystallized in calcium(II)chlorideX-RAY DIFFRACTION1.488