#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. ÅDate
15L00|1|A+ 5L00|1|B (rep)RNA (5'-R(*(LCC)P*(LCC)P*(LCC)P*(LCG)P*AP*CP*UP*UP*AP*AP*GP*UP*CP*GP*G)-3')synthetic constructSelf-complimentary RNA 15mer binding with GMP monomersX-ray diffraction1.252016-12-07
25L00|1|C+ 5L00|1|DRNA (5'-R(*(LCC)P*(LCC)P*(LCC)P*(LCG)P*AP*CP*UP*UP*AP*AP*GP*UP*CP*GP*G)-3')synthetic constructSelf-complimentary RNA 15mer binding with GMP monomersX-ray diffraction1.252016-12-07
35KRG|1|C+ 5KRG|1|DRNA (5'-R(*(LCC)P*(LCC)P*(LCC)P*(LCG)P*AP*CP*UP*UP*AP*AP*GP*UP*CP*GP*G)-3')synthetic constructRNA 15mer duplex binding with PZG monomerX-ray diffraction1.62016-12-07
45KRG|1|A+ 5KRG|1|BRNA (5'-R(*(LCC)P*(LCC)P*(LCC)P*(LCG)P*AP*CP*UP*UP*AP*AP*GP*UP*CP*GP*G)-3')synthetic constructRNA 15mer duplex binding with PZG monomerX-ray diffraction1.62016-12-07
57U87|1|A+ 7U87|1|BRNA (5'-R(*(LCC)P*(LCC)P*(LCC)P*(LCG)P*AP*CP*UP*UP*AP*AP*GP*UP*CP*(G46)P*(G46))-3')synthetic constructProduct of 13mer primer with activated G monomer diastereomer 1X-ray diffraction1.7012023-03-15
66U6J|1|A+ 6U6J|1|BRNA (5'-R(*(LCC)P*(LCC)P*(LCC)P*(LCG)P*AP*CP*UP*UP*AP*AP*GP*UP*CP*G*(DPG))-3')synthetic constructRNA-monomer complex containing pyrophosphate linkageX-ray diffraction1.62019-11-20
76C8O|1|A+ 6C8O|1|BRNA (5'-R(*(LCC)P*(LCC)P*(LCC)P*(LCG)P*AP*CP*UP*UP*AP*AP*GP*UP*CP*GP*G)-3')synthetic constructRNA-activated 2-AIpG monomer, 3h soakingX-ray diffraction1.852018-05-30
85V0H|1|A+ 5V0H|1|BRNA (5'-R(*(LCC)P*(LCC)P*(LCC)P*(LCG)P*AP*CP*UP*UP*AP*AP*GP*UP*CP*GP*G)-3')synthetic constructRNA duplex with 2-MeImpG analogue bound-one binding siteX-ray diffraction1.92017-03-08
97U89|1|A+ 7U89|1|BRNA (5'-R(*(LKC)P*(LCC)P*(LCC)P*(LCG)P*AP*CP*UP*UP*AP*AP*GP*UP*CP*GP*(G46))-3')synthetic constructProduct of 14mer primer with activated G monomer diastereomer 1X-ray diffraction1.652023-03-15
106C8N|1|A+ 6C8N|1|BRNA (5'-R(*(LCC)P*(LCC)P*(LCC)P*(LCG)P*AP*CP*UP*UP*AP*AP*GP*UP*CP*GP*G)-3')synthetic constructRNA-activated 2-AIpG monomer complex, 2h soakingX-ray diffraction1.92018-05-30

Release history

Release3.2743.2753.2763.2773.2783.2793.2803.2813.2823.2833.2843.2853.2863.2873.2883.2893.2903.2913.2923.2933.2943.2953.2963.2973.2983.2993.3003.3013.3023.3033.3043.3053.3063.3073.3083.3093.3103.3113.3123.3133.3143.3153.3163.3173.3183.3193.3203.3213.3223.3233.3243.3253.3263.3273.3283.3293.330
Date2023-03-152023-03-222023-03-292023-04-052023-04-122023-04-192023-04-262023-05-032023-05-102023-05-172023-05-242023-05-312023-06-072023-06-142023-06-212023-06-282023-07-052023-07-122023-07-192023-07-262023-08-022023-08-092023-08-162023-08-232023-08-302023-09-062023-09-132023-09-202023-09-272023-10-042023-10-112023-10-182023-10-252023-11-012023-11-082023-11-152023-11-242023-11-292023-12-062023-12-132023-12-202023-12-272024-01-032024-01-102024-01-172024-01-242024-01-312024-02-072024-02-142024-02-212024-02-282024-03-062024-03-132024-03-202024-03-272024-04-032024-04-10

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#SPDBTitleMethodResolutionLength
16C8N|1|A+6C8N|1|BRNA-activated 2-AIpG monomer complex, 2h soakingX-RAY DIFFRACTION1.911
26C8O|1|A+6C8O|1|BRNA-activated 2-AIpG monomer, 3h soakingX-RAY DIFFRACTION1.8511
35KRG|1|C+5KRG|1|DRNA 15mer duplex binding with PZG monomerX-RAY DIFFRACTION1.611
45KRG|1|A+5KRG|1|BRNA 15mer duplex binding with PZG monomerX-RAY DIFFRACTION1.611
56U6J|1|A+6U6J|1|BRNA-monomer complex containing pyrophosphate linkageX-RAY DIFFRACTION1.610
65L00|1|A+5L00|1|BSelf-complimentary RNA 15mer binding with GMP monomersX-RAY DIFFRACTION1.2513
75L00|1|C+5L00|1|DSelf-complimentary RNA 15mer binding with GMP monomersX-RAY DIFFRACTION1.2513
87U89|1|A+7U89|1|BProduct of 14mer primer with activated G monomer diastereomer 1X-RAY DIFFRACTION1.6510
97U87|1|A+7U87|1|BProduct of 13mer primer with activated G monomer diastereomer 1X-RAY DIFFRACTION1.7019
105V0H|1|A+5V0H|1|BRNA duplex with 2-MeImpG analogue bound-one binding siteX-RAY DIFFRACTION1.911
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