Equivalence class NR_2.0_47763.1 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 4MSR|1|A+ 4MSR|1|B (rep) | RNA 10mer duplex with six 2'-5'-linkages | RNA 10mer duplex with six 2'-5'-linkages | X-ray diffraction | 1.2 | 2014-02-12 | ||||
| 2 | 4MS9|1|A | Native RNA duplex 10mer | Native RNA-10mer Structure: ccggcgccgg | X-ray diffraction | 1.32 | 2014-02-12 | ||||
| 3 | 4MSB|1|A+ 4MSB|1|B | RNA 10mer duplex with two 2'-5'-linkages | RNA 10mer duplex with two 2'-5'-linkages | X-ray diffraction | 1.55 | 2014-02-12 | ||||
| 4 | 5TDJ|1|A | RNA (5'-R(*CP*CP*GP*GP*CP*GP*CP*CP*GP*G)-3') | synthetic construct | RNA decamer duplex with four 2'-5'-linkages | X-ray diffraction | 1.5 | 2017-01-11 | |||
| 5 | 5TDK|1|A+ 5TDK|1|B | RNA (5'-R(*CP*CP*GP*GP*CP*GP*CP*CP*GP*G)-3') | synthetic construct | RNA decamer duplex with eight 2'-5'-linkages | X-ray diffraction | 1.43 | 2017-01-11 | |||
| 6 | 5TDJ|1|B | RNA (5'-R(*CP*CP*GP*GP*CP*GP*CP*CP*GP*G)-3') | synthetic construct | RNA decamer duplex with four 2'-5'-linkages | X-ray diffraction | 1.5 | 2017-01-11 | |||
| 7 | 4MSB|1|C+ 4MSB|1|D | RNA 10mer duplex with two 2'-5'-linkages | RNA 10mer duplex with two 2'-5'-linkages | X-ray diffraction | 1.55 | 2014-02-12 | ||||
| 8 | 4MSB|1|E+ 4MSB|1|F | RNA 10mer duplex with two 2'-5'-linkages | RNA 10mer duplex with two 2'-5'-linkages | X-ray diffraction | 1.55 | 2014-02-12 | ||||
| 9 | 394D|1|A+ 394D|1|B | DNA/RNA (5'-D(*CP*CP*GP*GP)-R(*CP*GP)-D(*CP*CP*GP*G)-3') | CRYSTAL STRUCTURE OF TWO SELF-COMPLEMENTARY CHIMERIC DECAMERS D(CCGG)R(C)D(GCCGG) AND D(CCGG)R(CG)D(CCGG) | X-ray diffraction | 1.9 | 1998-05-01 | ||||
| 10 | 100D|1|A+ 100D|1|B | DNA/RNA (5'-R(*CP*)-D(*CP*GP*GP*CP*GP*CP*CP*GP*)-R(*G)-3') | CRYSTAL STRUCTURE OF THE HIGHLY DISTORTED CHIMERIC DECAMER R(C)D(CGGCGCCG)R(G)-SPERMINE COMPLEX-SPERMINE BINDING TO PHOSPHATE ONLY AND MINOR GROOVE TERTIARY BASE-PAIRING | X-ray diffraction | 1.9 | 1995-03-31 | ||||
| 11 | 161D|1|A | DNA/RNA (5'-D(*CP*CP*GP*GP*CP*)-R(*GP*)-D(*CP*CP*GP*G)-3') | A SINGLE 2'-HYDROXYL GROUP CONVERTS B-DNA TO A-DNA: CRYSTAL STRUCTURE OF THE DNA-RNA CHIMERIC DECAMER DUPLEX D(CCGGC)R(G)D(CCGG) WITH A NOVEL INTERMOLECULAR G.C BASE-PAIRED QUADRUPLET | X-ray diffraction | 1.9 | 1994-05-18 | ||||
| 12 | 393D|1|A | DNA/RNA (5'-D(*CP*CP*GP*GP)-R(*CP)-D(*GP*CP*CP*GP*G)-3') | synthetic construct | CRYSTAL STRUCTURE OF TWO SELF-COMPLEMENTARY CHIMERIC DECAMER D(CCGG)R(C)D(GCCGG) AND D(CCGG)R(CG)D(CCGG) | X-ray diffraction | 2 | 1998-05-01 | |||
| 13 | 161D|1|B | DNA/RNA (5'-D(*CP*CP*GP*GP*CP*)-R(*GP*)-D(*CP*CP*GP*G)-3') | A SINGLE 2'-HYDROXYL GROUP CONVERTS B-DNA TO A-DNA: CRYSTAL STRUCTURE OF THE DNA-RNA CHIMERIC DECAMER DUPLEX D(CCGGC)R(G)D(CCGG) WITH A NOVEL INTERMOLECULAR G.C BASE-PAIRED QUADRUPLET | X-ray diffraction | 1.9 | 1994-05-18 | ||||
| 14 | 393D|1|B | DNA/RNA (5'-D(*CP*CP*GP*GP)-R(*CP)-D(*GP*CP*CP*GP*G)-3') | synthetic construct | CRYSTAL STRUCTURE OF TWO SELF-COMPLEMENTARY CHIMERIC DECAMER D(CCGG)R(C)D(GCCGG) AND D(CCGG)R(CG)D(CCGG) | X-ray diffraction | 2 | 1998-05-01 |
Release history
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|---|---|---|---|---|
| NR_2.0_47763.1 | NR_2.0_97195.1 | 2.124 | (8) 4MSB|1|E+4MSB|1|F, 4MSB|1|C+4MSB|1|D, 5TDK|1|A+5TDK|1|B, 4MSB|1|A+4MSB|1|B, 5TDJ|1|B, 4MS9|1|A, 5TDJ|1|A, 4MSR|1|A+4MSR|1|B | (6) 161D|1|B, 161D|1|A, 100D|1|A+100D|1|B, 394D|1|A+394D|1|B, 393D|1|B, 393D|1|A | (0) |
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|---|---|---|---|---|
| NR_2.0_47763.1 | NR_2.0_87052.1 | 2.132 | (8) 4MS9|1|A, 4MSB|1|E+4MSB|1|F, 5TDJ|1|B, 4MSB|1|C+4MSB|1|D, 4MSR|1|A+4MSR|1|B, 5TDK|1|A+5TDK|1|B, 4MSB|1|A+4MSB|1|B, 5TDJ|1|A | (6) 393D|1|B, 161D|1|B, 100D|1|A+100D|1|B, 161D|1|A, 394D|1|A+394D|1|B, 393D|1|A | (0) |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|
| 1 | 393D|1|B | CRYSTAL STRUCTURE OF TWO SELF-COMPLEMENTARY CHIMERIC DECAMER D(CCGG)R(C)D(GCCGG) AND D(CCGG)R(CG)D(CCGG) | X-RAY DIFFRACTION | 2 | 1 |
| 2 | 161D|1|A | A SINGLE 2'-HYDROXYL GROUP CONVERTS B-DNA TO A-DNA: CRYSTAL STRUCTURE OF THE DNA-RNA CHIMERIC DECAMER DUPLEX D(CCGGC)R(G)D(CCGG) WITH A NOVEL INTERMOLECULAR G.C BASE-PAIRED QUADRUPLET | X-RAY DIFFRACTION | 1.9 | 1 |
| 3 | 4MSR|1|A+4MSR|1|B | RNA 10mer duplex with six 2'-5'-linkages | X-RAY DIFFRACTION | 1.2 | 12 |
| 4 | 5TDK|1|A+5TDK|1|B | RNA decamer duplex with eight 2'-5'-linkages | X-RAY DIFFRACTION | 1.43 | 10 |
| 5 | 4MSB|1|A+4MSB|1|B | RNA 10mer duplex with two 2'-5'-linkages | X-RAY DIFFRACTION | 1.55 | 10 |
| 6 | 4MSB|1|C+4MSB|1|D | RNA 10mer duplex with two 2'-5'-linkages | X-RAY DIFFRACTION | 1.55 | 10 |
| 7 | 5TDJ|1|B | RNA decamer duplex with four 2'-5'-linkages | X-RAY DIFFRACTION | 1.5 | 10 |
| 8 | 5TDJ|1|A | RNA decamer duplex with four 2'-5'-linkages | X-RAY DIFFRACTION | 1.5 | 10 |
| 9 | 4MS9|1|A | Native RNA-10mer Structure: ccggcgccgg | X-RAY DIFFRACTION | 1.32 | 10 |
| 10 | 4MSB|1|E+4MSB|1|F | RNA 10mer duplex with two 2'-5'-linkages | X-RAY DIFFRACTION | 1.55 | 10 |
| 11 | 161D|1|B | A SINGLE 2'-HYDROXYL GROUP CONVERTS B-DNA TO A-DNA: CRYSTAL STRUCTURE OF THE DNA-RNA CHIMERIC DECAMER DUPLEX D(CCGGC)R(G)D(CCGG) WITH A NOVEL INTERMOLECULAR G.C BASE-PAIRED QUADRUPLET | X-RAY DIFFRACTION | 1.9 | 1 |
| 12 | 393D|1|A | CRYSTAL STRUCTURE OF TWO SELF-COMPLEMENTARY CHIMERIC DECAMER D(CCGG)R(C)D(GCCGG) AND D(CCGG)R(CG)D(CCGG) | X-RAY DIFFRACTION | 2 | 1 |
| 13 | 394D|1|A+394D|1|B | CRYSTAL STRUCTURE OF TWO SELF-COMPLEMENTARY CHIMERIC DECAMERS D(CCGG)R(C)D(GCCGG) AND D(CCGG)R(CG)D(CCGG) | X-RAY DIFFRACTION | 1.9 | 2 |
| 14 | 100D|1|A+100D|1|B | CRYSTAL STRUCTURE OF THE HIGHLY DISTORTED CHIMERIC DECAMER R(C)D(CGGCGCCG)R(G)-SPERMINE COMPLEX-SPERMINE BINDING TO PHOSPHATE ONLY AND MINOR GROOVE TERTIARY BASE-PAIRING | X-RAY DIFFRACTION | 1.9 | 2 |