Equivalence class NR_2.0_74924.17 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 3PEY|1|B (rep) | RNA (5'-R(P*UP*UP*UP*UP*UP*U)-3') | S. cerevisiae Dbp5 bound to RNA and ADP BeF3 | X-ray diffraction | 1.4 | 2011-03-23 | ||||
| 2 | 3PEW|1|B | RNA (5'-R(P*UP*UP*UP*UP*UP*U)-3') | S. cerevisiae Dbp5 L327V bound to RNA and ADP BeF3 | X-ray diffraction | 1.5 | 2011-03-23 | ||||
| 3 | 5ELX|1|B | RNA (5'-R(P*UP*UP*UP*UP*UP*U)-3') | Saccharomyces cerevisiae | S. cerevisiae Dbp5 bound to RNA and mant-ADP BeF3 | X-ray diffraction | 1.81 | 2016-02-24 | |||
| 4 | 4ALP|1|E | HEXA URIDINE | synthetic construct | The Lin28b Cold shock domain in complex with hexauridine | X-ray diffraction | 1.48 | 2012-09-05 | |||
| 5 | 5SZE|1|C | RNA (5'-R(P*UP*UP*U)-3') | unidentified | Crystal structure of Aquifex aeolicus Hfq-RNA complex at 1.5A | X-ray diffraction | 1.5 | 2017-04-12 | |||
| 6 | 3O8C|1|C | RNA (5'-R(P*UP*(5BU)P*UP*UP*UP*U)-3') | Visualizing ATP-dependent RNA Translocation by the NS3 Helicase from HCV | X-ray diffraction | 2 | 2011-01-05 | ||||
| 7 | 3PF5|1|R | hexaribouracil (rU6) | Crystal structure of Bs-CspB in complex with rU6 | X-ray diffraction | 1.68 | 2011-09-21 | ||||
| 8 | 6WRE|1|D | RNA (5'-R(*UP*(U37)P*(U37)P*UP)-3') | Homo sapiens | Crystal structure of mouse DXO in complex with 5'-OH RNA substrate mimic and calcium ion | X-ray diffraction | 2 | 2020-05-13 | |||
| 9 | 6I0U|1|B | RNA (5'-R(*UP*UP*UP*U)-3') | Drosophila melanogaster | Crystal structure of DmTailor in complex with U6 RNA | X-ray diffraction | 2 | 2018-12-05 | |||
| 10 | 3PF5|1|S | hexaribouracil (rU6) | Crystal structure of Bs-CspB in complex with rU6 | X-ray diffraction | 1.68 | 2011-09-21 | ||||
| 11 | 6PPN|1|A | Mimic of unprocessed U6 snRNA | synthetic construct | Structure of S. pombe Lsm2-8 with unprocessed U6 snRNA | X-ray diffraction | 1.91 | 2020-06-17 | |||
| 12 | 6PPN|1|I | Mimic of unprocessed U6 snRNA | synthetic construct | Structure of S. pombe Lsm2-8 with unprocessed U6 snRNA | X-ray diffraction | 1.91 | 2020-06-17 |
Release history
| Release | 3.221 | 3.222 | 3.223 | 3.224 | 3.225 | 3.226 | 3.227 | 3.228 | 3.229 | 3.230 | 3.231 | 3.232 | 3.233 | 3.234 | 3.235 | 3.236 | 3.237 | 3.238 | 3.239 | 3.240 | 3.241 | 3.242 | 3.243 | 3.244 | 3.245 | 3.246 | 3.247 | 3.248 | 3.249 | 3.250 | 3.251 | 3.252 | 3.253 | 3.254 | 3.255 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2022-03-09 | 2022-03-16 | 2022-03-23 | 2022-03-30 | 2022-04-06 | 2022-04-13 | 2022-04-20 | 2022-04-27 | 2022-05-04 | 2022-05-11 | 2022-05-18 | 2022-05-25 | 2022-06-01 | 2022-06-08 | 2022-06-15 | 2022-06-22 | 2022-06-29 | 2022-07-06 | 2022-07-13 | 2022-07-20 | 2022-07-27 | 2022-08-03 | 2022-08-10 | 2022-08-17 | 2022-08-24 | 2022-08-31 | 2022-09-07 | 2022-09-14 | 2022-09-21 | 2022-09-28 | 2022-10-05 | 2022-10-12 | 2022-10-19 | 2022-10-26 | 2022-11-02 |
Parents
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|
| 1 | 4ALP|1|E | The Lin28b Cold shock domain in complex with hexauridine | X-RAY DIFFRACTION | 1.48 | 6 |
| 2 | 3PF5|1|R | Crystal structure of Bs-CspB in complex with rU6 | X-RAY DIFFRACTION | 1.68 | 9 |
| 3 | 6PPN|1|I | Structure of S. pombe Lsm2-8 with unprocessed U6 snRNA | X-RAY DIFFRACTION | 1.91 | 5 |
| 4 | 6PPN|1|A | Structure of S. pombe Lsm2-8 with unprocessed U6 snRNA | X-RAY DIFFRACTION | 1.91 | 5 |
| 5 | 6I0U|1|B | Crystal structure of DmTailor in complex with U6 RNA | X-RAY DIFFRACTION | 2 | 4 |
| 6 | 5ELX|1|B | S. cerevisiae Dbp5 bound to RNA and mant-ADP BeF3 | X-RAY DIFFRACTION | 1.81 | 6 |
| 7 | 3PEY|1|B | S. cerevisiae Dbp5 bound to RNA and ADP BeF3 | X-RAY DIFFRACTION | 1.4 | 6 |
| 8 | 3PEW|1|B | S. cerevisiae Dbp5 L327V bound to RNA and ADP BeF3 | X-RAY DIFFRACTION | 1.5 | 6 |
| 9 | 3O8C|1|C | Visualizing ATP-dependent RNA Translocation by the NS3 Helicase from HCV | X-RAY DIFFRACTION | 2 | 5 |
| 10 | 3PF5|1|S | Crystal structure of Bs-CspB in complex with rU6 | X-RAY DIFFRACTION | 1.68 | 1 |
| 11 | 5SZE|1|C | Crystal structure of Aquifex aeolicus Hfq-RNA complex at 1.5A | X-RAY DIFFRACTION | 1.5 | 3 |
| 12 | 6WRE|1|D | Crystal structure of mouse DXO in complex with 5'-OH RNA substrate mimic and calcium ion | X-RAY DIFFRACTION | 2 | 3 |