Equivalence class NR_2.0_97151.3 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 5Z1I|1|A (rep) | RNA (5'-R(P*GP*CP*GP*UP*CP*GP*CP*GP*CP*CP*GP*GP*CP*GP*AP*AP*GP*UP*CP*GP*C)-3') | synthetic construct | Crystal structure of the protozoal cytoplasmic ribosomal decoding site in complex with 6'-fluoro sisomicin | X-ray diffraction | 1.9 | 2018-05-30 | |||
| 2 | 2PWT|1|A+ 2PWT|1|B | 22-mer of the ribosomal decoding site | Crystal structure of the bacterial ribosomal decoding site complexed with aminoglycoside containing the L-HABA group | X-ray diffraction | 1.8 | 2007-09-18 | ||||
| 3 | 4F8U|1|A+ 4F8U|1|B | RNA (5'-R(P*UP*GP*CP*GP*UP*CP*AP*CP*AP*CP*CP*GP*GP*UP*GP*AP*AP*GP*UP*CP*GP*C)-3'), RNA (5'-R(P*GP*CP*GP*UP*CP*AP*CP*AP*CP*CP*GP*GP*UP*GP*AP*AP*GP*UP*CP*GP*C)-3') | Crystal structure of the bacterial ribosomal decoding site in complex with sisomicin (C2 form) | X-ray diffraction | 2 | 2012-08-15 |
Release history
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|---|---|---|---|---|
| NR_2.0_97151.3 | NR_2.0_19598.3 | 3.59 | (1) 5Z1I|1|A | (2) 4F8U|1|A+4F8U|1|B, 2PWT|1|A+2PWT|1|B | (0) |
| NR_2.0_97151.3 | NR_2.0_97151.2 | 3.59 | (2) 4F8U|1|A+4F8U|1|B, 2PWT|1|A+2PWT|1|B | (1) 5Z1I|1|A | (0) |
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|---|---|---|---|---|
| NR_2.0_97151.3 | NR_2.0_71199.1 | 3.75 | (3) 2PWT|1|A+2PWT|1|B, 4F8U|1|A+4F8U|1|B, 5Z1I|1|A | (0) | (0) |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|
| 1 | 4F8U|1|A+4F8U|1|B | Crystal structure of the bacterial ribosomal decoding site in complex with sisomicin (C2 form) | X-RAY DIFFRACTION | 2 | 22 |
| 2 | 5Z1I|1|A | Crystal structure of the protozoal cytoplasmic ribosomal decoding site in complex with 6'-fluoro sisomicin | X-RAY DIFFRACTION | 1.9 | 21 |
| 3 | 2PWT|1|A+2PWT|1|B | Crystal structure of the bacterial ribosomal decoding site complexed with aminoglycoside containing the L-HABA group | X-RAY DIFFRACTION | 1.8 | 21 |