#IFECompound(s)RNA source organismTitleMethodResolutionDate
15UED|1|A+ 5UED|1|B (rep)RNA (5'-R(*(LCC)P*(LCC)P*(LCC)P*GP*AP*CP*UP*UP*AP*AP*GP*UP*CP*G)-3')RNA primer-template complex with guanosine dinucleotide ligand G(5')pp(5')GX-RAY DIFFRACTION1.52017-07-05
26C8J|1|A+ 6C8J|1|BRNA (5'-R(*(LCC)P*(LCC)P*(LCC)P*(LCG)P*AP*CP*UP*UP*AP*AP*GP*UP*CP*G)-3')RNA-activated 2-AIpG monomer complex, 15 min soakingX-RAY DIFFRACTION1.52018-05-30
36C8D|1|A+ 6C8D|1|BRNA (5'-R(*(LCC)P*(LCC)P*(LCC)P*(LCG)P*AP*CP*UP*UP*AP*AP*GP*UP*CP*G)-3')RNA-dGMP complex with Mg ionX-RAY DIFFRACTION1.922018-05-30
46C8I|1|A+ 6C8I|1|BRNA (5'-R(*(LCC)P*(LCC)P*(LCC)P*(LCG)P*AP*CP*UP*UP*AP*AP*GP*UP*CP*G)-3')RNA-activated 2-AIpG monomer complex, 5 min soakingX-RAY DIFFRACTION1.772018-05-30
55UEE|1|A+ 5UEE|1|BRNA (5'-R(*(LCC)P*(LCC)P*(LCC)P*GP*AP*CP*UP*UP*AP*AP*GP*UP*CP*G)-3')RNA primer-template complex with guanosine dinucleotide ligand G(5')ppp(5')GX-RAY DIFFRACTION1.92017-07-05
66C8L|1|A+ 6C8L|1|BRNA (5'-R(*(LCC)P*(LCC)P*(LCC)P*(LCG)P*AP*CP*UP*UP*AP*AP*GP*UP*CP*G)-3')RNA-activated 2-AIpG monomer complex, 1h soakingX-RAY DIFFRACTION2.252018-05-30
76C8E|1|A+ 6C8E|1|BRNA (5'-R(*(LCC)P*(LCC)P*(LCC)P*(LCG)P*AP*CP*UP*UP*AP*AP*GP*UP*CP*G)-3')RNA-imidazolium-bridged intermediate complex, 4h soakingX-RAY DIFFRACTION1.82018-05-30
86U8U|1|A+ 6U8U|1|BRNA (5'-R(*(LCC)P*(LCC)P*(LCC)P*(LCG)P*AP*CP*UP*UP*AP*AP*GP*UP*CP*G)-3')RNA duplex bound with TNA 3'-3' imidazolium dimerX-RAY DIFFRACTION2.42020-12-09
95UEF|1|A+ 5UEF|1|BRNA (5'-R(*(LCC)P*(LCC)P*(LCC)P*GP*AP*CP*UP*UP*AP*AP*GP*UP*CP*G)-3')RNA primer-template complex with guanosine dinucleotide p(5')G(3')p(5')G ligandX-RAY DIFFRACTION2.12017-07-05
106C8K|1|A+ 6C8K|1|BRNA (5'-R(*(LCC)P*(LCC)P*(LCC)P*(LCG)P*AP*CP*UP*UP*AP*AP*GP*UP*CP*G)-3')RNA-activated 2-AIpG monomer complex, 30 min soakingX-RAY DIFFRACTION2.262018-05-30
116CAB|1|A+ 6CAB|1|BRNA (5'-R(*(LCC)P*(LCC)P*(LCC)P*(LCG)P*AP*CP*UP*UP*AP*AP*GP*UP*CP*G)-3')RNA-dGMP complex with Sr ionX-RAY DIFFRACTION2.52018-05-30
126OWL|1|ARNA (5'-R(*(LCC)P*(LCC)P*(LCC)P*(LCG)P*AP*CP*UP*UP*AP*AP*GP*UP*CP*R)-3')synthetic constructRNA oligonucleotides with 3'-arabino guanosine co-crystallized with GMPX-RAY DIFFRACTION22020-02-26

Release history

Release3.1563.1573.1583.1593.1603.1613.1623.1633.1643.1653.1663.1673.1683.1693.1703.1713.1723.1733.1743.1753.1763.1773.1783.1793.1803.1813.1823.183
Date2020-12-092020-12-162020-12-232020-12-302021-01-062021-01-132021-01-202021-01-272021-02-032021-02-102021-02-172021-02-242021-03-032021-03-102021-03-172021-03-242021-03-312021-04-072021-04-142021-04-212021-04-282021-05-052021-05-122021-05-192021-05-262021-06-022021-06-092021-06-16

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#SPDBTitleMethodResolutionLength
16CAB|1|A+6CAB|1|BRNA-dGMP complex with Sr ionX-RAY DIFFRACTION2.512
25UEE|1|A+5UEE|1|BRNA primer-template complex with guanosine dinucleotide ligand G(5')ppp(5')GX-RAY DIFFRACTION1.911
36C8K|1|A+6C8K|1|BRNA-activated 2-AIpG monomer complex, 30 min soakingX-RAY DIFFRACTION2.2610
46C8L|1|A+6C8L|1|BRNA-activated 2-AIpG monomer complex, 1h soakingX-RAY DIFFRACTION2.2510
56C8J|1|A+6C8J|1|BRNA-activated 2-AIpG monomer complex, 15 min soakingX-RAY DIFFRACTION1.510
66C8D|1|A+6C8D|1|BRNA-dGMP complex with Mg ionX-RAY DIFFRACTION1.9210
76C8E|1|A+6C8E|1|BRNA-imidazolium-bridged intermediate complex, 4h soakingX-RAY DIFFRACTION1.810
85UEF|1|A+5UEF|1|BRNA primer-template complex with guanosine dinucleotide p(5')G(3')p(5')G ligandX-RAY DIFFRACTION2.111
95UED|1|A+5UED|1|BRNA primer-template complex with guanosine dinucleotide ligand G(5')pp(5')GX-RAY DIFFRACTION1.511
106C8I|1|A+6C8I|1|BRNA-activated 2-AIpG monomer complex, 5 min soakingX-RAY DIFFRACTION1.7710
116U8U|1|A+6U8U|1|BRNA duplex bound with TNA 3'-3' imidazolium dimerX-RAY DIFFRACTION2.410
126OWL|1|ARNA oligonucleotides with 3'-arabino guanosine co-crystallized with GMPX-RAY DIFFRACTION29