#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. ÅDate
13ULD|1|B (rep)RNA (5'-R(*UP*CP*GP*AP*CP*A)-3')High resolution structure of DNA/RNA hybrid in complex with RNase H catalytic domain D132N mutantX-ray diffraction1.62012-11-14
22G8K|1|B5'-R(*UP*CP*GP*AP*CP*A)-3'B. halodurans RNase H catalytic domain D192N mutant in complex with Ca2+ and RNA/DNA hybrid (non-P nick at the active site)X-ray diffraction1.652006-04-25
32G8I|1|B5'-R(*UP*CP*GP*AP*CP*A)-3'B. halodurans RNase H catalytic domain D192N mutant in complex with Mn2+ and RNA/DNA hybrid (non-P nick at the active site)X-ray diffraction1.652006-04-25
45USE|1|BRNA (5'-R(*UP*CP*GP*AP*CP*A)-3')synthetic construct5-Se-T4-DNA and native RNA hybrid in complex with RNase H catalytic domain D132N mutantX-ray diffraction1.732017-03-08
52G8F|1|B5'-R(*UP*CP*GP*AP*CP*A)-3'B. halodurans RNase H catalytic domain E188A mutant in complex with Mg2+ and RNA/DNA hybrid (non-P nick at the active site)X-ray diffraction1.652006-04-25
65USA|1|BRNA (5'-R(*UP*CP*GP*AP*CP*A)-3')synthetic construct5-Se-T2-DNA and native RNA hybrid in complex with RNase H catalytic domain D132N mutantX-ray diffraction1.82017-03-08
72R7Y|1|BRNA (5'-R(*UP*CP*GP*AP*CP*A)-3')Selenium Derivatized RNA/DNA Hybrid in complex with RNase H CATALYTIC DOMAIN MUTANT D132NX-ray diffraction1.82008-05-06
85USG|1|BRNA (5'-R(*UP*CP*GP*AP*CP*A)-3')synthetic construct5-Se-T2/4-DNA and native RNA hybrid in complex with RNase H catalytic domain D132N mutantX-ray diffraction1.72017-03-08
95US2|1|BRNA (5'-R(*UP*CP*GP*AP*CP*A)-3')synthetic construct2-Se-T2-DNA and native RNA hybrid in complex with RNase H catalytic domain D132N mutantX-ray diffraction1.92017-03-08
102G8H|1|B5'-R(*UP*CP*GP*AP*CP*A)-3'B. halodurans RNase H catalytic domain D192N mutant in complex with Mg2+ and RNA/DNA hybrid (non-P nick at the active site)X-ray diffraction1.852006-04-25
113TWH|1|BRNA (5'-R(*UP*CP*GP*AP*CP*A)-3')Selenium Derivatized RNA/DNA Hybrid in complex with RNase H Catalytic Domain D132N MutantX-ray diffraction1.792012-10-03
122G8V|1|B5'-R(P*UP*CP*GP*AP*CP*A)-3'B. halodurans RNase H catalytic domain E188A mutant in complex with Mg2+ and RNA/DNA hybrid (reaction product)X-ray diffraction1.852006-04-25
132G8W|1|B5'-R(P*UP*CP*GP*AP*CP*A)-3'B. halodurans RNase H catalytic domain E188A mutant in complex with Ca2+ and RNA/DNA hybridX-ray diffraction2.052006-04-25

Release history

Release2.1182.1192.1202.1212.1222.1232.1242.1252.1262.1272.1282.1292.1302.1312.1322.1332.134
Date2017-03-102017-03-172017-03-242017-03-312017-04-112017-04-152017-04-262017-04-292017-05-092017-05-152017-05-202017-05-272017-06-072017-06-112017-06-212017-06-242017-06-28

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent
NR_2.5_09880.2NR_2.5_09880.12.118(9) 2G8F|1|B, 2G8H|1|B, 2G8I|1|B, 2G8K|1|B, 2G8V|1|B, 2G8W|1|B, 2R7Y|1|B, 3TWH|1|B, 3ULD|1|B(4) 5US2|1|B, 5USA|1|B, 5USE|1|B, 5USG|1|B(0)

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child
NR_2.5_09880.2NR_2.5_09880.32.135(13) 2G8F|1|B, 2G8H|1|B, 2G8I|1|B, 2G8K|1|B, 2G8V|1|B, 2G8W|1|B, 2R7Y|1|B, 3TWH|1|B, 3ULD|1|B, 5US2|1|B, 5USA|1|B, 5USE|1|B, 5USG|1|B(0) (2) 5W7N|1|B, 5W7O|1|B

Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.

#SViewPDBTitleMethodResolutionLength
12G8W|1|BB. halodurans RNase H catalytic domain E188A mutant in complex with Ca2+ and RNA/DNA hybridX-RAY DIFFRACTION2.056
23ULD|1|BHigh resolution structure of DNA/RNA hybrid in complex with RNase H catalytic domain D132N mutantX-RAY DIFFRACTION1.66
35USA|1|B5-Se-T2-DNA and native RNA hybrid in complex with RNase H catalytic domain D132N mutantX-RAY DIFFRACTION1.86
45USG|1|B5-Se-T2/4-DNA and native RNA hybrid in complex with RNase H catalytic domain D132N mutantX-RAY DIFFRACTION1.76
55USE|1|B5-Se-T4-DNA and native RNA hybrid in complex with RNase H catalytic domain D132N mutantX-RAY DIFFRACTION1.736
62G8H|1|BB. halodurans RNase H catalytic domain D192N mutant in complex with Mg2+ and RNA/DNA hybrid (non-P nick at the active site)X-RAY DIFFRACTION1.856
72G8I|1|BB. halodurans RNase H catalytic domain D192N mutant in complex with Mn2+ and RNA/DNA hybrid (non-P nick at the active site)X-RAY DIFFRACTION1.656
82G8F|1|BB. halodurans RNase H catalytic domain E188A mutant in complex with Mg2+ and RNA/DNA hybrid (non-P nick at the active site)X-RAY DIFFRACTION1.656
92G8K|1|BB. halodurans RNase H catalytic domain D192N mutant in complex with Ca2+ and RNA/DNA hybrid (non-P nick at the active site)X-RAY DIFFRACTION1.656
103TWH|1|BSelenium Derivatized RNA/DNA Hybrid in complex with RNase H Catalytic Domain D132N MutantX-RAY DIFFRACTION1.796
112R7Y|1|BSelenium Derivatized RNA/DNA Hybrid in complex with RNase H CATALYTIC DOMAIN MUTANT D132NX-RAY DIFFRACTION1.86
125US2|1|B2-Se-T2-DNA and native RNA hybrid in complex with RNase H catalytic domain D132N mutantX-RAY DIFFRACTION1.96
132G8V|1|BB. halodurans RNase H catalytic domain E188A mutant in complex with Mg2+ and RNA/DNA hybrid (reaction product)X-RAY DIFFRACTION1.856

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.


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