RNA 3D Hub //

Equivalence class NR_2.5_10157.104 Obsolete

#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. ÅDate
14YBB|1|DB (rep)5S ribosomal RNA5S rRNAEscherichia coliBacteriaRF00001High-resolution structure of the Escherichia coli ribosomeX-ray diffraction2.12015-03-18
24YBB|1|CB5S ribosomal RNA5S rRNAEscherichia coliBacteriaRF00001High-resolution structure of the Escherichia coli ribosomeX-ray diffraction2.12015-03-18
38B0X|1|b5S ribosomal RNA5S rRNAEscherichia coli BBacteriaRF00001Translating 70S ribosome in the unrotated state (P and E, tRNAs)Electron microscopy1.552022-11-30
47K00|1|b5S ribosomal RNA5S rRNAEscherichia coliBacteriaRF00001Structure of the Bacterial Ribosome at 2 Angstrom ResolutionElectron microscopy1.982020-09-23
56XZ7|1|B5S ribosomal RNA5S rRNAEscherichia coliBacteriaRF00001E. coli 50S ribosomal subunit in complex with dirithromycin, fMet-Phe-tRNA(Phe) and deacylated tRNA(iMet).Electron microscopy2.12020-07-22
67QQ3|1|J5S ribosomal RNA5S ribosomal RNAEscherichia coli K-12BacteriaRF00001Cryo-EM structure of the E.coli 50S ribosomal subunit in complex with the antibiotic Myxovalargin A.Electron microscopy2.12023-01-18
77ZP8|1|a5S ribosomal RNA5S rRNAEscherichia coliBacteriaRF0000170S E. coli ribosome with a stalled filamin domain 5 nascent chainElectron microscopy2.22022-08-10
87LVK|1|J5S ribosomal RNA5S rRNAEscherichia coliBacteriaRF00001Cfr-modified 50S subunit from Escherichia coliElectron microscopy2.22021-12-15
96PJ6|1|J5S ribosomal RNA5S rRNAEscherichia coliBacteriaRF00001High resolution cryo-EM structure of E.coli 50SElectron microscopy2.22020-01-22
107N1P|1|55S ribosomal RNA5S rRNAEscherichia coli K-12BacteriaRF00001Elongating 70S ribosome complex in a classical pre-translocation (PRE-C) conformationElectron microscopy2.332021-07-14
117PJS|1|B5S ribosomal RNA5S ribosomal RNAEscherichia coliBacteriaRF00001Structure of the 70S ribosome with tRNAs in the classical pre-translocation state and apramycin (C)Electron microscopy2.352021-10-20
127Z20|1|a5S ribosomal RNA5S rRNAEscherichia coliBacteriaRF0000170S E. coli ribosome with an extended uL23 loop from Candidatus marinimicrobia and a stalled filamin domain 5 nascent chainElectron microscopy2.292022-08-10
137O1A|1|BB5S ribosomal RNARibosomal RNA 5SEscherichia coli K-12BacteriaRF00001Cryo-EM structure of an Escherichia coli TnaC(R23F)-ribosome complex stalled in response to L-tryptophanElectron microscopy2.42021-09-01
147S1H|1|J5S ribosomal RNA5S rRNAEscherichia coliBacteriaRF00001Wild-type Escherichia coli ribosome with antibiotic linezolidElectron microscopy2.352021-11-17
157S1K|1|J5S ribosomal RNA5S rRNAEscherichia coliBacteriaRF00001Cfr-modified Escherichia coli stalled ribosome with antibiotic radezolidElectron microscopy2.422022-01-19
167BL4|1|B5S ribosomal RNA5S ribosomal RNAEscherichia coli K-12BacteriaRF00001in vitro reconstituted 50S-ObgE-GMPPNP-RsfS particleElectron microscopy2.42021-05-12
177S1J|1|J5S ribosomal RNA5S rRNAEscherichia coliBacteriaRF00001Wild-type Escherichia coli ribosome with antibiotic radezolidElectron microscopy2.472022-03-02
187S1G|1|J5S ribosomal RNA5S rRNAEscherichia coliBacteriaRF00001wild-type Escherichia coli stalled ribosome with antibiotic linezolidElectron microscopy2.482021-11-17
197S1I|1|J5S ribosomal RNA5S rRNAEscherichia coliBacteriaRF00001Wild-type Escherichia coli stalled ribosome with antibiotic radezolidElectron microscopy2.482022-03-02
206PC6|1|J5S ribosomal RNA5S ribosomal RNAEscherichia coliBacteriaRF00001E. coli 50S ribosome bound to compound 47Electron microscopy2.52020-06-17
216PCR|1|J5S ribosomal RNA5S ribosomal RNAEscherichia coliBacteriaRF00001E. coli 50S ribosome bound to compound 40oElectron microscopy2.52020-06-17
226PC7|1|J5S ribosomal RNA5S ribosomal RNAEscherichia coliBacteriaRF00001E. coli 50S ribosome bound to compound 46Electron microscopy2.52020-06-17

Release history

Release3.266
Date2023-01-18

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent
NR_2.5_10157.104NR_2.5_10157.1033.266(21) 6PC6|1|J, 4YBB|1|DB, 4YBB|1|CB, 8B0X|1|b, 7ZP8|1|a, 7Z20|1|a, 7S1K|1|J, 7S1J|1|J, 7S1I|1|J, 7S1H|1|J, 7S1G|1|J, 7PJS|1|B, 7O1A|1|BB, 7N1P|1|5, 7LVK|1|J, 7K00|1|b, 7BL4|1|B, 6XZ7|1|B, 6PJ6|1|J, 6PCR|1|J, 6PC7|1|J(1) 7QQ3|1|J(0)

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child
NR_2.5_10157.104NR_2.5_10157.1053.267(22) 4YBB|1|CB, 7PJS|1|B, 7QQ3|1|J, 7S1G|1|J, 7S1H|1|J, 7S1I|1|J, 7S1J|1|J, 7S1K|1|J, 7Z20|1|a, 7ZP8|1|a, 7O1A|1|BB, 7N1P|1|5, 4YBB|1|DB, 6PC6|1|J, 6PC7|1|J, 6PCR|1|J, 6PJ6|1|J, 6XZ7|1|B, 7BL4|1|B, 7K00|1|b, 7LVK|1|J, 8B0X|1|b(0) (0)

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#SPDBTitleMethodResolutionLength
17PJS|1|BStructure of the 70S ribosome with tRNAs in the classical pre-translocation state and apramycin (C)ELECTRON MICROSCOPY2.35120
27LVK|1|JCfr-modified 50S subunit from Escherichia coliELECTRON MICROSCOPY2.2118
36PJ6|1|JHigh resolution cryo-EM structure of E.coli 50SELECTRON MICROSCOPY2.2118
44YBB|1|CBHigh-resolution structure of the Escherichia coli ribosomeX-RAY DIFFRACTION2.1118
54YBB|1|DBHigh-resolution structure of the Escherichia coli ribosomeX-RAY DIFFRACTION2.1120
66XZ7|1|BE. coli 50S ribosomal subunit in complex with dirithromycin, fMet-Phe-tRNA(Phe) and deacylated tRNA(iMet).ELECTRON MICROSCOPY2.1120
77N1P|1|5Elongating 70S ribosome complex in a classical pre-translocation (PRE-C) conformationELECTRON MICROSCOPY2.33120
87K00|1|bStructure of the Bacterial Ribosome at 2 Angstrom ResolutionELECTRON MICROSCOPY1.98119
98B0X|1|bTranslating 70S ribosome in the unrotated state (P and E, tRNAs)ELECTRON MICROSCOPY1.55119
107O1A|1|BBCryo-EM structure of an Escherichia coli TnaC(R23F)-ribosome complex stalled in response to L-tryptophanELECTRON MICROSCOPY2.4120
117QQ3|1|JCryo-EM structure of the E.coli 50S ribosomal subunit in complex with the antibiotic Myxovalargin A.ELECTRON MICROSCOPY2.1118
127S1I|1|JWild-type Escherichia coli stalled ribosome with antibiotic radezolidELECTRON MICROSCOPY2.48118
137S1G|1|Jwild-type Escherichia coli stalled ribosome with antibiotic linezolidELECTRON MICROSCOPY2.48118
147S1H|1|JWild-type Escherichia coli ribosome with antibiotic linezolidELECTRON MICROSCOPY2.35118
157S1K|1|JCfr-modified Escherichia coli stalled ribosome with antibiotic radezolidELECTRON MICROSCOPY2.42118
167S1J|1|JWild-type Escherichia coli ribosome with antibiotic radezolidELECTRON MICROSCOPY2.47118
176PCR|1|JE. coli 50S ribosome bound to compound 40oELECTRON MICROSCOPY2.5118
186PC6|1|JE. coli 50S ribosome bound to compound 47ELECTRON MICROSCOPY2.5118
196PC7|1|JE. coli 50S ribosome bound to compound 46ELECTRON MICROSCOPY2.5118
207BL4|1|Bin vitro reconstituted 50S-ObgE-GMPPNP-RsfS particleELECTRON MICROSCOPY2.4119
217Z20|1|a70S E. coli ribosome with an extended uL23 loop from Candidatus marinimicrobia and a stalled filamin domain 5 nascent chainELECTRON MICROSCOPY2.29118
227ZP8|1|a70S E. coli ribosome with a stalled filamin domain 5 nascent chainELECTRON MICROSCOPY2.2118
Copyright 2024 BGSU RNA group. Page generated in 0.4186 s