BGSU RNA Site //

Equivalence class NR_2.5_16232.3 Current

#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodÅDate
15L00|1|A+ 5L00|1|B (rep)RNA (5'-R(*(LCC)P*(LCC)P*(LCC)P*(LCG)P*AP*CP*UP*UP*AP*AP*GP*UP*CP*GP*G)-3')synthetic constructSyntheticSelf-complimentary RNA 15mer binding with GMP monomersX-ray diffraction1.252016-12-07
25L00|1|C+ 5L00|1|DRNA (5'-R(*(LCC)P*(LCC)P*(LCC)P*(LCG)P*AP*CP*UP*UP*AP*AP*GP*UP*CP*GP*G)-3')synthetic constructSyntheticSelf-complimentary RNA 15mer binding with GMP monomersX-ray diffraction1.252016-12-07
35KRG|1|C+ 5KRG|1|DRNA (5'-R(*(LCC)P*(LCC)P*(LCC)P*(LCG)P*AP*CP*UP*UP*AP*AP*GP*UP*CP*GP*G)-3')synthetic constructSyntheticRNA 15mer duplex binding with PZG monomerX-ray diffraction1.62016-12-07
45KRG|1|A+ 5KRG|1|BRNA (5'-R(*(LCC)P*(LCC)P*(LCC)P*(LCG)P*AP*CP*UP*UP*AP*AP*GP*UP*CP*GP*G)-3')synthetic constructSyntheticRNA 15mer duplex binding with PZG monomerX-ray diffraction1.62016-12-07
57U87|1|A+ 7U87|1|BRNA (5'-R(*(LCC)P*(LCC)P*(LCC)P*(LCG)P*AP*CP*UP*UP*AP*AP*GP*UP*CP*(G46)P*(G46))-3')synthetic constructSyntheticProduct of 13mer primer with activated G monomer diastereomer 1X-ray diffraction1.7012023-03-15
66U6J|1|A+ 6U6J|1|BRNA (5'-R(*(LCC)P*(LCC)P*(LCC)P*(LCG)P*AP*CP*UP*UP*AP*AP*GP*UP*CP*G*(DPG))-3')synthetic constructSyntheticRNA-monomer complex containing pyrophosphate linkageX-ray diffraction1.62019-11-20
76C8O|1|A+ 6C8O|1|BRNA (5'-R(*(LCC)P*(LCC)P*(LCC)P*(LCG)P*AP*CP*UP*UP*AP*AP*GP*UP*CP*GP*G)-3')synthetic constructSyntheticRNA-activated 2-AIpG monomer, 3h soakingX-ray diffraction1.852018-05-30
85V0H|1|A+ 5V0H|1|BRNA (5'-R(*(LCC)P*(LCC)P*(LCC)P*(LCG)P*AP*CP*UP*UP*AP*AP*GP*UP*CP*GP*G)-3')synthetic constructSyntheticRNA duplex with 2-MeImpG analogue bound-one binding siteX-ray diffraction1.92017-03-08
97U89|1|A+ 7U89|1|BRNA (5'-R(*(LKC)P*(LCC)P*(LCC)P*(LCG)P*AP*CP*UP*UP*AP*AP*GP*UP*CP*GP*(G46))-3')synthetic constructSyntheticProduct of 14mer primer with activated G monomer diastereomer 1X-ray diffraction1.652023-03-15
106C8N|1|A+ 6C8N|1|BRNA (5'-R(*(LCC)P*(LCC)P*(LCC)P*(LCG)P*AP*CP*UP*UP*AP*AP*GP*UP*CP*GP*G)-3')synthetic constructSyntheticRNA-activated 2-AIpG monomer complex, 2h soakingX-ray diffraction1.92018-05-30
117U8A|1|A+ 7U8A|1|BRNA (5'-R(*(LKC)P*(LCC)P*(LCC)P*(LCG)P*AP*CP*UP*UP*AP*AP*GP*UP*CP*GP*(G46))-3')synthetic constructSyntheticProduct of 14mer primer with activated G monomer diastereomer 2X-ray diffraction2.12023-03-15
126C8M|1|A+ 6C8M|1|BRNA (5'-R(*(LCC)P*(LCC)P*(LCC)P*(LCG)P*AP*CP*UP*UP*AP*AP*GP*UP*CP*GP*G)-3'), RNA (5'-R(*(LCC)P*(LCC)P*(LCC)P*(LCG)P*AP*CP*UP*UP*AP*AP*GP*UP*CP*G)-3')synthetic constructSyntheticRNA-activated 2-AIpG monomer, 1.5h soakingX-ray diffraction2.42018-05-30
137U88|1|A+ 7U88|1|BRNA (5'-R(*(LKC)P*(LCC)P*(LCC)P*(LCG)P*AP*CP*UP*UP*AP*AP*GP*UP*CP*(G46)P*(G46))-3')synthetic constructSyntheticProduct of 13mer primer with activated G monomer diastereomer 2X-ray diffraction2.142023-03-15

Release history

Release3.2743.2753.2763.2773.2783.279
Date2023-03-152023-03-222023-03-292023-04-052023-04-122023-04-19

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent
NR_2.5_16232.3NR_2.5_16232.23.274(9) 5KRG|1|C+5KRG|1|D, 6U6J|1|A+6U6J|1|B, 5KRG|1|A+5KRG|1|B, 6C8O|1|A+6C8O|1|B, 6C8N|1|A+6C8N|1|B, 6C8M|1|A+6C8M|1|B, 5V0H|1|A+5V0H|1|B, 5L00|1|C+5L00|1|D, 5L00|1|A+5L00|1|B(4) 7U89|1|A+7U89|1|B, 7U88|1|A+7U88|1|B, 7U87|1|A+7U87|1|B, 7U8A|1|A+7U8A|1|B(0)

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#SPDBTitleMethodResolutionLength
15KRG|1|A+5KRG|1|BRNA 15mer duplex binding with PZG monomerX-RAY DIFFRACTION1.611
25KRG|1|C+5KRG|1|DRNA 15mer duplex binding with PZG monomerX-RAY DIFFRACTION1.611
36U6J|1|A+6U6J|1|BRNA-monomer complex containing pyrophosphate linkageX-RAY DIFFRACTION1.610
45L00|1|A+5L00|1|BSelf-complimentary RNA 15mer binding with GMP monomersX-RAY DIFFRACTION1.2513
55L00|1|C+5L00|1|DSelf-complimentary RNA 15mer binding with GMP monomersX-RAY DIFFRACTION1.2513
67U89|1|A+7U89|1|BProduct of 14mer primer with activated G monomer diastereomer 1X-RAY DIFFRACTION1.6510
77U88|1|A+7U88|1|BProduct of 13mer primer with activated G monomer diastereomer 2X-RAY DIFFRACTION2.149
85V0H|1|A+5V0H|1|BRNA duplex with 2-MeImpG analogue bound-one binding siteX-RAY DIFFRACTION1.911
97U87|1|A+7U87|1|BProduct of 13mer primer with activated G monomer diastereomer 1X-RAY DIFFRACTION1.7019
107U8A|1|A+7U8A|1|BProduct of 14mer primer with activated G monomer diastereomer 2X-RAY DIFFRACTION2.110
116C8O|1|A+6C8O|1|BRNA-activated 2-AIpG monomer, 3h soakingX-RAY DIFFRACTION1.8511
126C8N|1|A+6C8N|1|BRNA-activated 2-AIpG monomer complex, 2h soakingX-RAY DIFFRACTION1.911
136C8M|1|A+6C8M|1|BRNA-activated 2-AIpG monomer, 1.5h soakingX-RAY DIFFRACTION2.411