Equivalence class NR_2.5_19598.3 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 5Z1I|1|A (rep) | RNA (5'-R(P*GP*CP*GP*UP*CP*GP*CP*GP*CP*CP*GP*GP*CP*GP*AP*AP*GP*UP*CP*GP*C)-3') | synthetic construct | Synthetic | Crystal structure of the protozoal cytoplasmic ribosomal decoding site in complex with 6'-fluoro sisomicin | X-ray diffraction | 1.9 | 2018-05-30 | ||
| 2 | 5ZEG|1|A+ 5ZEG|1|B+ 5ZEG|1|C | RNA (5'-R(*UP*UP*GP*CP*GP*UP*CP*(1MA)P*CP*GP*UP*CP*GP*AP*CP*GP*AP*AP*GP*UP*CP*GP*C)-3') | synthetic construct | Synthetic | Crystal structure of the bacterial A1408me1A-mutant ribosomal decoding site | X-ray diffraction | 2.4 | 2018-03-21 | ||
| 3 | 5ZEI|1|A+ 5ZEI|1|B | RNA (5'-R(P*UP*GP*CP*GP*UP*CP*(1MA)P*CP*GP*UP*CP*GP*AP*CP*GP*AP*AP*GP*UP*CP*GP*C)-3'), RNA (5'-R(P*GP*CP*GP*UP*CP*(1MA)P*CP*GP*UP*CP*GP*AP*CP*GP*AP*AP*GP*UP*CP*GP*C)-3') | synthetic construct | Synthetic | Crystal structure of the bacterial A1408me1A-mutant ribosomal decoding site in complex with geneticin | X-ray diffraction | 2.1 | 2018-03-21 | ||
| 4 | 5Z1H|1|B+ 5Z1H|1|A | RNA (5'-R(*UP*UP*GP*CP*GP*UP*CP*AP*CP*GP*CP*CP*GP*GP*CP*GP*AP*AP*GP*UP*CP*GP*C)-3') | synthetic construct | Synthetic | Crystal structure of the bacterial ribosomal decoding site in complex with 6'-fluoro sisomicin | X-ray diffraction | 2.4 | 2018-05-30 |
Release history
| Release | 3.31 | 3.32 | 3.33 | 3.34 | 3.35 | 3.36 | 3.37 | 3.38 | 3.39 | 3.40 | 3.41 | 3.42 | 3.43 | 3.44 | 3.45 | 3.46 | 3.47 | 3.48 | 3.49 | 3.50 | 3.51 | 3.52 | 3.53 | 3.54 | 3.55 | 3.56 | 3.57 | 3.58 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2018-07-20 | 2018-07-27 | 2018-08-03 | 2018-08-10 | 2018-08-17 | 2018-08-24 | 2018-08-31 | 2018-09-07 | 2018-09-14 | 2018-09-21 | 2018-09-28 | 2018-10-05 | 2018-10-12 | 2018-10-19 | 2018-10-26 | 2018-11-02 | 2018-11-09 | 2018-11-16 | 2018-11-23 | 2018-11-30 | 2018-12-07 | 2018-12-14 | 2018-12-21 | 2018-12-28 | 2019-01-04 | 2019-01-11 | 2019-01-18 | 2019-01-25 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|---|---|---|---|---|
| NR_2.5_19598.3 | NR_2.5_19598.2 | 3.31 | (4) 5Z1H|1|B+5Z1H|1|A, 5Z1I|1|A, 5ZEG|1|A+5ZEG|1|B+5ZEG|1|C, 5ZEI|1|A+5ZEI|1|B | (0) | (0) |
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|---|---|---|---|---|
| NR_2.5_19598.3 | NR_2.5_03323.1 | 3.59 | (1) 5ZEI|1|A+5ZEI|1|B | (3) 5Z1I|1|A, 5Z1H|1|B+5Z1H|1|A, 5ZEG|1|A+5ZEG|1|B+5ZEG|1|C | (0) |
| NR_2.5_19598.3 | NR_2.5_46565.1 | 3.59 | (1) 5ZEG|1|A+5ZEG|1|B+5ZEG|1|C | (3) 5ZEI|1|A+5ZEI|1|B, 5Z1I|1|A, 5Z1H|1|B+5Z1H|1|A | (0) |
| NR_2.5_19598.3 | NR_2.5_97151.3 | 3.59 | (2) 5Z1H|1|B+5Z1H|1|A, 5Z1I|1|A | (2) 5ZEI|1|A+5ZEI|1|B, 5ZEG|1|A+5ZEG|1|B+5ZEG|1|C | (14) 1MWL|1|A+1MWL|1|B, 2ET4|1|A+2ET4|1|B, 2PWT|1|A+2PWT|1|B, 3WRU|1|A+3WRU|1|B, 4K32|1|A+4K32|1|B, 4WCP|1|A+4WCP|1|B+4WCP|1|C, 5Z71|1|B+5Z71|1|A, 1J7T|1|A+1J7T|1|B, 2ESJ|1|A+2ESJ|1|B, 2ET5|1|A+2ET5|1|B, 3TD1|1|B+3TD1|1|A, 4F8U|1|A+4F8U|1|B, 4P3S|1|B+4P3S|1|A, 4WCQ|1|A+4WCQ|1|B |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|
| 1 | 5ZEI|1|A+5ZEI|1|B | Crystal structure of the bacterial A1408me1A-mutant ribosomal decoding site in complex with geneticin | X-RAY DIFFRACTION | 2.1 | 21 |
| 2 | 5Z1I|1|A | Crystal structure of the protozoal cytoplasmic ribosomal decoding site in complex with 6'-fluoro sisomicin | X-RAY DIFFRACTION | 1.9 | 21 |
| 3 | 5Z1H|1|B+5Z1H|1|A | Crystal structure of the bacterial ribosomal decoding site in complex with 6'-fluoro sisomicin | X-RAY DIFFRACTION | 2.4 | 23 |
| 4 | 5ZEG|1|A+5ZEG|1|B+5ZEG|1|C | Crystal structure of the bacterial A1408me1A-mutant ribosomal decoding site | X-RAY DIFFRACTION | 2.4 | 22 |