BGSU RNA Site //

Equivalence class NR_2.5_19951.13 Obsolete

#IFEStandardized nameMoleculeOrganismDomainRfamTitleMethodÅDate
14YCO|1|D (rep)Transfer RNAtRNApheEscherichia coliBacteriaRF00005E. coli dihydrouridine synthase C (DusC) in complex with tRNAPheX-ray diffraction2.12015-04-22
24YCO|1|ETransfer RNAtRNApheEscherichia coliBacteriaRF00005E. coli dihydrouridine synthase C (DusC) in complex with tRNAPheX-ray diffraction2.12015-04-22
33FOZ|1|CTransfer RNAtRNA(Phe)RF00005Structure of E. coli Isopentenyl-tRNA transferase in complex with E. coli tRNA(Phe)X-ray diffraction2.52009-01-20
44YCO|1|FTransfer RNAtRNApheEscherichia coliBacteriaRF00005E. coli dihydrouridine synthase C (DusC) in complex with tRNAPheX-ray diffraction2.12015-04-22
53FOZ|1|DTransfer RNAtRNA(Phe)RF00005Structure of E. coli Isopentenyl-tRNA transferase in complex with E. coli tRNA(Phe)X-ray diffraction2.52009-01-20
64W2F|1|AWTransfer RNAA/P-site tRNA, mRNAEscherichia coliBacteriaRF00005Crystal structure of the Thermus thermophilus 70S ribosome in complex with amicoumacin, mRNA and three deacylated tRNAs in the A, P and E sitesX-ray diffraction2.42014-10-15
74Y4P|1|1wTransfer RNAA-site and E-site tRNAs, mRNAEscherichia coliBacteriaRF00005Crystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to mRNA and A-, P- and E-site tRNAs at 2.5A resolutionX-ray diffraction2.52015-03-18
84Y4P|1|2yTransfer RNAA-site and E-site tRNAsEscherichia coliBacteriaRF00005Crystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to mRNA and A-, P- and E-site tRNAs at 2.5A resolutionX-ray diffraction2.52015-03-18
94Y4P|1|2wTransfer RNAA-site and E-site tRNAs, mRNAEscherichia coliBacteriaRF00005Crystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to mRNA and A-, P- and E-site tRNAs at 2.5A resolutionX-ray diffraction2.52015-03-18
104W2F|1|AYTransfer RNAA/P-site tRNAEscherichia coliBacteriaRF00005Crystal structure of the Thermus thermophilus 70S ribosome in complex with amicoumacin, mRNA and three deacylated tRNAs in the A, P and E sitesX-ray diffraction2.42014-10-15
114W2F|1|CYTransfer RNAA/P-site tRNAEscherichia coliBacteriaRF00005Crystal structure of the Thermus thermophilus 70S ribosome in complex with amicoumacin, mRNA and three deacylated tRNAs in the A, P and E sitesX-ray diffraction2.42014-10-15
124Y4P|1|1yTransfer RNAA-site and E-site tRNAsEscherichia coliBacteriaRF00005Crystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to mRNA and A-, P- and E-site tRNAs at 2.5A resolutionX-ray diffraction2.52015-03-18
134W2F|1|CWTransfer RNAA/P-site tRNA, mRNAEscherichia coliBacteriaRF00005Crystal structure of the Thermus thermophilus 70S ribosome in complex with amicoumacin, mRNA and three deacylated tRNAs in the A, P and E sitesX-ray diffraction2.42014-10-15

Release history

Release2.742.752.762.772.782.792.802.812.822.832.842.852.862.872.882.892.902.912.922.932.94
Date2016-05-062016-05-132016-05-202016-05-272016-06-032016-06-102016-06-172016-06-242016-07-012016-07-082016-07-152016-07-222016-07-292016-08-052016-08-122016-08-192016-08-262016-09-022016-09-092016-09-162016-09-23

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent
NR_2.5_19951.13NR_all_19951.122.74(13) 4W2F|1|CW, 4YCO|1|D, 4Y4P|1|2y, 4YCO|1|E, 4W2F|1|CY, 4Y4P|1|1w, 4YCO|1|F, 3FOZ|1|C, 4Y4P|1|2w, 3FOZ|1|D, 4Y4P|1|1y, 4W2F|1|AY, 4W2F|1|AW(0) (156) 4Z3S|1|2y, 4V9C|1|AV, 4V5G|1|CW, 5J4B|1|1w, 4WT1|1|1L, 4V9H|1|AV, 4V5D|1|CY, 5J4C|1|1w, 4WZO|1|3L, 4V8J|1|AW, 4W2E|1|x, 4V5E|1|CW, 1VY4|1|AW, 4V51|1|CW, 4V6F|1|CC, 4V5C|1|CY, 4WQR|1|3L, 4V6L|1|AB, 4V4Y|1|AB, 2ZM5|1|C, 4WQU|1|DY, 4V6F|1|BB, 3J46|1|a, 4WQF|1|DY, 4WRO|1|3L, 4V5Q|1|CW, 3JCE|1|6, 4W2I|1|CY, 4V5R|1|CW, 4WPO|1|BY, 4V5P|1|CW, 4W2H|1|CY, 1VY5|1|AW, 4V5L|1|AW, 4V5J|1|CW, 5AFI|1|y, 4WSD|1|1K, 4V97|1|CW, 4V5D|1|AV, 5DOY|1|2y, 4V5C|1|CW, 4WT1|1|1K, 4V6L|1|AE, 4V9D|1|BV, 4V5D|1|CW, 4V4I|1|z, 4WZO|1|3K, 4V7D|1|BW, 4V5E|1|CV, 4V69|1|AW, 4V51|1|AW, 4WQF|1|DW, 4V6F|1|CB, 3JCE|1|9, 1VY5|1|AY, 4WQR|1|3K, 4V5S|1|AV, 1VY7|1|CY, 4WPO|1|DW, 4WQU|1|DW, 4V5P|1|CV, 2ZXU|1|D, 4W2H|1|AY, 4V5Q|1|CV, 4W2I|1|CW, 4V5L|1|AV, 5J4B|1|2y, 4W2G|1|AW, 5J4C|1|2y, 4V5G|1|CV, 4V7D|1|BV, 4V4Y|1|AD, 4V97|1|AW, 4WSD|1|3L, 4V5D|1|CV, 4P6F|1|XW, 4V5S|1|CW, 4WQF|1|BY, 4WQR|1|1L, 1VY7|1|AY, 4V5P|1|AW, 4W2G|1|CY, 5DOY|1|2w, 5J4B|1|2w, 4V5E|1|AW, 4P6F|1|QW, 4V7C|1|AW, 4V5S|1|CV, 4WRO|1|3K, 3JCD|1|9, 4V6K|1|BE, 4V5R|1|CV, 4WPO|1|BW, 4WQF|1|BW,

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child
NR_2.5_19951.13NR_2.5_19951.142.95(13) 3FOZ|1|C, 4YCO|1|E, 4YCO|1|D, 4Y4P|1|2y, 4Y4P|1|2w, 4Y4P|1|1y, 4Y4P|1|1w, 4W2F|1|CY, 4W2F|1|CW, 4W2F|1|AY, 4W2F|1|AW, 3FOZ|1|D, 4YCO|1|F(0) (0)

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#SPDBTitleMethodResolutionLength
13FOZ|1|DStructure of E. coli Isopentenyl-tRNA transferase in complex with E. coli tRNA(Phe)X-RAY DIFFRACTION2.569
24Y4P|1|2wCrystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to mRNA and A-, P- and E-site tRNAs at 2.5A resolutionX-RAY DIFFRACTION2.565
34W2F|1|CWCrystal structure of the Thermus thermophilus 70S ribosome in complex with amicoumacin, mRNA and three deacylated tRNAs in the A, P and E sitesX-RAY DIFFRACTION2.465
44W2F|1|AWCrystal structure of the Thermus thermophilus 70S ribosome in complex with amicoumacin, mRNA and three deacylated tRNAs in the A, P and E sitesX-RAY DIFFRACTION2.467
54Y4P|1|1wCrystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to mRNA and A-, P- and E-site tRNAs at 2.5A resolutionX-RAY DIFFRACTION2.567
63FOZ|1|CStructure of E. coli Isopentenyl-tRNA transferase in complex with E. coli tRNA(Phe)X-RAY DIFFRACTION2.574
74Y4P|1|2yCrystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to mRNA and A-, P- and E-site tRNAs at 2.5A resolutionX-RAY DIFFRACTION2.566
84W2F|1|CYCrystal structure of the Thermus thermophilus 70S ribosome in complex with amicoumacin, mRNA and three deacylated tRNAs in the A, P and E sitesX-RAY DIFFRACTION2.466
94Y4P|1|1yCrystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to mRNA and A-, P- and E-site tRNAs at 2.5A resolutionX-RAY DIFFRACTION2.567
104W2F|1|AYCrystal structure of the Thermus thermophilus 70S ribosome in complex with amicoumacin, mRNA and three deacylated tRNAs in the A, P and E sitesX-RAY DIFFRACTION2.467
114YCO|1|EE. coli dihydrouridine synthase C (DusC) in complex with tRNAPheX-RAY DIFFRACTION2.167
124YCO|1|DE. coli dihydrouridine synthase C (DusC) in complex with tRNAPheX-RAY DIFFRACTION2.174
134YCO|1|FE. coli dihydrouridine synthase C (DusC) in complex with tRNAPheX-RAY DIFFRACTION2.171