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Equivalence class NR_2.5_19951.7 Obsolete

#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. ÅDate
14YCO|1|D (rep)Transfer RNAtRNApheEscherichia coliBacteriaRF00005E. coli dihydrouridine synthase C (DusC) in complex with tRNAPheX-ray diffraction2.12015-04-22
24YCO|1|ETransfer RNAtRNApheEscherichia coliBacteriaRF00005E. coli dihydrouridine synthase C (DusC) in complex with tRNAPheX-ray diffraction2.12015-04-22
33FOZ|1|CtRNA(Phe)Structure of E. coli Isopentenyl-tRNA transferase in complex with E. coli tRNA(Phe)X-ray diffraction2.52009-01-20
44YCO|1|FTransfer RNAtRNApheEscherichia coliBacteriaRF00005E. coli dihydrouridine synthase C (DusC) in complex with tRNAPheX-ray diffraction2.12015-04-22
53FOZ|1|DtRNA(Phe)Structure of E. coli Isopentenyl-tRNA transferase in complex with E. coli tRNA(Phe)X-ray diffraction2.52009-01-20
64W2F|1|AWTransfer RNAA/P-site tRNA, mRNAEscherichia coliBacteriaRF00005Crystal structure of the Thermus thermophilus 70S ribosome in complex with amicoumacin, mRNA and three deacylated tRNAs in the A, P and E sitesX-ray diffraction2.42014-10-15
74Y4P|1|1wTransfer RNAA-site and E-site tRNAs, mRNAEscherichia coliBacteriaRF00005Crystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to mRNA and A-, P- and E-site tRNAs at 2.5A resolutionX-ray diffraction2.52015-03-18
84Y4P|1|2yTransfer RNAA-site and E-site tRNAsEscherichia coliBacteriaRF00005Crystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to mRNA and A-, P- and E-site tRNAs at 2.5A resolutionX-ray diffraction2.52015-03-18
94Y4P|1|2wTransfer RNAA-site and E-site tRNAs, mRNAEscherichia coliBacteriaRF00005Crystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to mRNA and A-, P- and E-site tRNAs at 2.5A resolutionX-ray diffraction2.52015-03-18
104W2F|1|AYTransfer RNAA/P-site tRNAEscherichia coliBacteriaRF00005Crystal structure of the Thermus thermophilus 70S ribosome in complex with amicoumacin, mRNA and three deacylated tRNAs in the A, P and E sitesX-ray diffraction2.42014-10-15
114W2F|1|CYTransfer RNAA/P-site tRNAEscherichia coliBacteriaRF00005Crystal structure of the Thermus thermophilus 70S ribosome in complex with amicoumacin, mRNA and three deacylated tRNAs in the A, P and E sitesX-ray diffraction2.42014-10-15
124Y4P|1|1yTransfer RNAA-site and E-site tRNAsEscherichia coliBacteriaRF00005Crystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to mRNA and A-, P- and E-site tRNAs at 2.5A resolutionX-ray diffraction2.52015-03-18
134W2F|1|CWTransfer RNAA/P-site tRNA, mRNAEscherichia coliBacteriaRF00005Crystal structure of the Thermus thermophilus 70S ribosome in complex with amicoumacin, mRNA and three deacylated tRNAs in the A, P and E sitesX-ray diffraction2.42014-10-15

Release history

Release2.272.282.292.302.312.322.332.34
Date2015-06-122015-06-192015-06-262015-07-032015-07-102015-07-172015-07-242015-07-31

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent
NR_2.5_19951.7NR_all_19951.62.27(13) 4W2F|1|AY, 4YCO|1|D, 4W2F|1|AW, 4W2F|1|CW, 4YCO|1|F, 4YCO|1|E, 4Y4P|1|1w, 4W2F|1|CY, 4Y4P|1|1y, 3FOZ|1|D, 4Y4P|1|2y, 3FOZ|1|C, 4Y4P|1|2w(0) (119) 1VY4|1|CY, 4V5Q|1|AV, 4V5C|1|CW, 4V9D|1|BV, 4P6F|1|QW, 4WQF|1|DY, 4V5G|1|AW, 4V5P|1|CV, 4V6L|1|AB, 4V5E|1|CW, 4V5S|1|AV, 4V6K|1|BB, 1VY4|1|AY, 4W2G|1|CW, 4V5C|1|AW, 4V9C|1|CV, 4V5R|1|CV, 4WQF|1|BY, 4V97|1|AW, 4V5P|1|AV, 4V51|1|AW, 4V5J|1|CW, 4WPO|1|DY, 1VY7|1|CY, 4V6F|1|CC, 4W2G|1|AW, 4V5D|1|CY, 1VY5|1|CY, 4V5R|1|AV, 4V5D|1|AY, 4Z3S|1|2w, 4W2E|1|w, 4V4Y|1|AC, 4WQU|1|DY, 4V8J|1|CW, 4V5Q|1|CV, 4WPO|1|BY, 4V7D|1|BV, 4V4I|1|z, 4V5G|1|CW, 4W2I|1|CY, 1VY5|1|AY, 4V6F|1|BB, 4V9I|1|AW, 4V5S|1|CV, 4V5D|1|AW, 2ZM5|1|D, 4WPO|1|DW, 4V6F|1|CB, 4Z3S|1|2y, 4V5D|1|CW, 4V5Q|1|CW, 4V6F|1|BC, 4Z3S|1|1y, 4V9I|1|CW, 4V4Y|1|AB, 4V8J|1|AW, 4V5Q|1|AW, 4WPO|1|BW, 4V7C|1|AW, 4V5J|1|AW, 4P6F|1|XW, 4V5G|1|CV, 4W2I|1|CW, 1VY5|1|AW, 4V69|1|AW, 4V9H|1|AV, 4V5D|1|AV, 1VY4|1|CW, 4V5P|1|CW, 4V5C|1|AY, 4WQU|1|BY, 4V9D|1|AV, 3L0U|1|A, 4WQF|1|DW, 4V7C|1|AV, 4V5P|1|AW, 4W2I|1|AW, 4V6K|1|BE, 2ZXU|1|D, 4V5E|1|CV, 4W2H|1|AY, 1VY4|1|AW, 4V5E|1|AV, 4V9C|1|AV, 4V5R|1|AW, 4V5L|1|AW, 4V4Y|1|AD, 4V5S|1|CW, 4WQU|1|DW, 4V5C|1|CY, 4V5S|1|AW, 4WQU|1|BW, 3J46|1

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#SPDBTitleMethodResolutionLength
14Y4P|1|2wCrystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to mRNA and A-, P- and E-site tRNAs at 2.5A resolutionX-RAY DIFFRACTION2.565
24W2F|1|CWCrystal structure of the Thermus thermophilus 70S ribosome in complex with amicoumacin, mRNA and three deacylated tRNAs in the A, P and E sitesX-RAY DIFFRACTION2.465
34W2F|1|AWCrystal structure of the Thermus thermophilus 70S ribosome in complex with amicoumacin, mRNA and three deacylated tRNAs in the A, P and E sitesX-RAY DIFFRACTION2.467
44Y4P|1|1wCrystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to mRNA and A-, P- and E-site tRNAs at 2.5A resolutionX-RAY DIFFRACTION2.567
53FOZ|1|CStructure of E. coli Isopentenyl-tRNA transferase in complex with E. coli tRNA(Phe)X-RAY DIFFRACTION2.574
64Y4P|1|2yCrystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to mRNA and A-, P- and E-site tRNAs at 2.5A resolutionX-RAY DIFFRACTION2.566
74W2F|1|CYCrystal structure of the Thermus thermophilus 70S ribosome in complex with amicoumacin, mRNA and three deacylated tRNAs in the A, P and E sitesX-RAY DIFFRACTION2.466
84Y4P|1|1yCrystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to mRNA and A-, P- and E-site tRNAs at 2.5A resolutionX-RAY DIFFRACTION2.567
94W2F|1|AYCrystal structure of the Thermus thermophilus 70S ribosome in complex with amicoumacin, mRNA and three deacylated tRNAs in the A, P and E sitesX-RAY DIFFRACTION2.467
104YCO|1|EE. coli dihydrouridine synthase C (DusC) in complex with tRNAPheX-RAY DIFFRACTION2.167
114YCO|1|DE. coli dihydrouridine synthase C (DusC) in complex with tRNAPheX-RAY DIFFRACTION2.174
124YCO|1|FE. coli dihydrouridine synthase C (DusC) in complex with tRNAPheX-RAY DIFFRACTION2.171
133FOZ|1|DStructure of E. coli Isopentenyl-tRNA transferase in complex with E. coli tRNA(Phe)X-RAY DIFFRACTION2.569
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