Equivalence class NR_2.5_21280.24 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 7O7Y|1|A2 (rep) | Small subunit ribosomal RNA | 18S rRNA | Oryctolagus cuniculus | Eukarya | RF01960 | Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (high resolution) | Electron microscopy | 2.2 | 2021-06-02 |
| 2 | 7OYD|1|9 | Small subunit ribosomal RNA | 18S rRNA | Oryctolagus cuniculus | Eukarya | RF01960 | Cryo-EM structure of a rabbit 80S ribosome with zebrafish Dap1b | Electron microscopy | 2.3 | 2022-07-20 |
| 3 | 7O7Z|1|A2 | Small subunit ribosomal RNA | 18S rRNA | Oryctolagus cuniculus | Eukarya | RF01960 | Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (classified for pseudoknot) | Electron microscopy | 2.4 | 2021-06-02 |
Release history
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|---|---|---|---|---|
| NR_2.5_21280.24 | NR_2.5_21280.23 | 3.241 | (3) 7O7Y|1|A2, 7O7Z|1|A2, 7OYD|1|9 | (0) | (0) |
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|---|---|---|---|---|
| NR_2.5_21280.24 | NR_2.5_21280.25 | 3.247 | (3) 7O7Y|1|A2, 7O7Z|1|A2, 7OYD|1|9 | (0) | (0) |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|
| 1 | 7O7Y|1|A2 | Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (high resolution) | ELECTRON MICROSCOPY | 2.2 | 1688 |
| 2 | 7O7Z|1|A2 | Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (classified for pseudoknot) | ELECTRON MICROSCOPY | 2.4 | 1688 |
| 3 | 7OYD|1|9 | Cryo-EM structure of a rabbit 80S ribosome with zebrafish Dap1b | ELECTRON MICROSCOPY | 2.3 | 1664 |