Equivalence class NR_2.5_42241.2 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 2GDI|1|X (rep) | TPP riboswitch | Crystal structure of thiamine pyrophosphate-specific riboswitch in complex with thiamine pyrophosphate | X-ray diffraction | 2.05 | 2006-07-04 | ||||
| 2 | 2GDI|1|Y | TPP riboswitch | Crystal structure of thiamine pyrophosphate-specific riboswitch in complex with thiamine pyrophosphate | X-ray diffraction | 2.05 | 2006-07-04 | ||||
| 3 | 7TDA|1|A | TPP riboswitch (THI element) | thiM TPP riboswitch RNA (80-MER) | Escherichia coli | Bacteria | RF00059 | Crystal structure of the E. coli thiM riboswitch in complex with thiamine pyrophosphate, manganese ions | X-ray diffraction | 2.25 | 2022-02-16 |
| 4 | 2HOJ|1|A | thi-box riboswitch | Crystal structure of an E. coli thi-box riboswitch bound to thiamine pyrophosphate, manganese ions | X-ray diffraction | 2.5 | 2006-09-19 | ||||
| 5 | 7TDC|1|A | TPP riboswitch (THI element) | thiM riboswitch RNA (83-MER) | Escherichia coli | Bacteria | RF00059 | Crystal structure of the E. coli thiM riboswitch in complex with thiamine bisphosphonate, calcium ions | X-ray diffraction | 2.46 | 2022-02-16 |
Release history
Parents
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|
| 1 | 2HOJ|1|A | Crystal structure of an E. coli thi-box riboswitch bound to thiamine pyrophosphate, manganese ions | X-RAY DIFFRACTION | 2.5 | 78 |
| 2 | 7TDA|1|A | Crystal structure of the E. coli thiM riboswitch in complex with thiamine pyrophosphate, manganese ions | X-RAY DIFFRACTION | 2.25 | 79 |
| 3 | 7TDC|1|A | Crystal structure of the E. coli thiM riboswitch in complex with thiamine bisphosphonate, calcium ions | X-RAY DIFFRACTION | 2.46 | 79 |
| 4 | 2GDI|1|X | Crystal structure of thiamine pyrophosphate-specific riboswitch in complex with thiamine pyrophosphate | X-RAY DIFFRACTION | 2.05 | 78 |
| 5 | 2GDI|1|Y | Crystal structure of thiamine pyrophosphate-specific riboswitch in complex with thiamine pyrophosphate | X-RAY DIFFRACTION | 2.05 | 78 |