#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. ÅDate
13TD1|1|B+ 3TD1|1|A (rep)RNA (5'-R(*UP*UP*GP*CP*GP*UP*CP*GP*CP*GP*(5BU)P*CP*GP*AP*CP*GP*AP*AP*GP*UP*CP*GP*C)-3')Crystal structure of the bacterial A1408G-mutant and the protozoa cytoplasmic ribosomal decoding site in complex with geneticinX-ray diffraction2.12011-12-07
23BNR|1|A+ 3BNR|1|BA site of human mitochondrial ribosome, chain one, A site of human mitochondrial ribosome, chain twoCrystal Structure of the Homo sapiens Mitochondrial Ribosomal Decoding Site in the presence of nonspecifically bound paromomycin (A1555G mutant, Br-derivative)X-ray diffraction2.12008-06-24
32FQN|1|A+ 2FQN|1|B5'-R(*UP*UP*GP*CP*GP*UP*CP*GP*CP*UP*CP*CP*GP*GP*AP*AP*AP*AP*GP*UP*CP*GP*C)-3'Crystal structure of the Homo sapiens cytoplasmic ribosomal decoding A siteX-ray diffraction2.32006-02-14
43BNQ|1|A+ 3BNQ|1|BA site of human mitochondrial ribosome, A chainCrystal Structure of the Homo sapiens Mitochondrial Ribosomal Decoding Site in the Presence of SrCl2 (A1555G mutant, Br-derivative)X-ray diffraction22008-06-24
53BNS|1|A+ 3BNS|1|BA site of human mitochondrial ribosome, chain three, A site of human mitochondrial ribosome, chain twoCrystal Structure of the Homo sapiens Mitochondrial Ribosomal Decoding Site (A1555G mutant, Br-derivative)X-ray diffraction1.92008-06-24
64K31|1|B+ 4K31|1|CRNA (5'-R(*UP*UP*GP*CP*GP*UP*CP*GP*UP*UP*CP*CP*GP*GP*AP*AP*AP*AP*GP*UP*CP*GP*C)-3')LeishmaniaCrystal structure of apramycin bound to the leishmanial rRNA A-siteX-ray diffraction1.412013-07-31
73TD0|1|B+ 3TD0|1|ARNA (5'-R(*UP*UP*GP*CP*GP*UP*CP*GP*CP*GP*(5BU)P*CP*GP*AP*CP*GP*AP*AP*GP*UP*CP*GP*C)-3')Crystal structure of the bacterial A1408G-mutant and the protozoa cytoplasmic ribosomal decoding siteX-ray diffraction1.62011-12-07
83BNR|1|C+ 3BNR|1|DA site of human mitochondrial ribosome, chain one, A site of human mitochondrial ribosome, chain threeCrystal Structure of the Homo sapiens Mitochondrial Ribosomal Decoding Site in the presence of nonspecifically bound paromomycin (A1555G mutant, Br-derivative)X-ray diffraction2.12008-06-24
93BNS|1|C+ 3BNS|1|DA site of human mitochondrial ribosome, chain threeCrystal Structure of the Homo sapiens Mitochondrial Ribosomal Decoding Site (A1555G mutant, Br-derivative)X-ray diffraction1.92008-06-24
103BNQ|1|C+ 3BNQ|1|DA site of human mitochondrial ribosome, A chain, A site of human mitochondrial ribosome, B chainCrystal Structure of the Homo sapiens Mitochondrial Ribosomal Decoding Site in the Presence of SrCl2 (A1555G mutant, Br-derivative)X-ray diffraction22008-06-24
114K32|1|A+ 4K32|1|BRNA (5'-R(*UP*UP*GP*CP*GP*UP*CP*GP*UP*UP*CP*CP*GP*GP*AP*AP*AP*AP*GP*UP*CP*GP*C)-3')LeishmaniaCrystal structure of geneticin bound to the leishmanial rRNA A-siteX-ray diffraction2.52013-07-31
123WRU|1|A+ 3WRU|1|BRNA (5'-R(*UP*UP*GP*CP*GP*UP*CP*AP*CP*GP*CP*CP*GP*GP*CP*GP*AP*AP*GP*UP*CP*GP*C)-3')Crystal structure of the bacterial ribosomal decoding site in complex with synthetic aminoglycoside with F-HABA groupX-ray diffraction2.32014-11-05

Release history

Release2.02.12.22.32.4
Date2014-12-052014-12-122014-12-192014-12-262015-01-02

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#SPDBTitleMethodResolutionLength
13BNQ|1|C+3BNQ|1|DCrystal Structure of the Homo sapiens Mitochondrial Ribosomal Decoding Site in the Presence of SrCl2 (A1555G mutant, Br-derivative)X-RAY DIFFRACTION222
23BNR|1|C+3BNR|1|DCrystal Structure of the Homo sapiens Mitochondrial Ribosomal Decoding Site in the presence of nonspecifically bound paromomycin (A1555G mutant, Br-derivative)X-RAY DIFFRACTION2.122
33BNS|1|C+3BNS|1|DCrystal Structure of the Homo sapiens Mitochondrial Ribosomal Decoding Site (A1555G mutant, Br-derivative)X-RAY DIFFRACTION1.922
43BNS|1|A+3BNS|1|BCrystal Structure of the Homo sapiens Mitochondrial Ribosomal Decoding Site (A1555G mutant, Br-derivative)X-RAY DIFFRACTION1.922
53BNR|1|A+3BNR|1|BCrystal Structure of the Homo sapiens Mitochondrial Ribosomal Decoding Site in the presence of nonspecifically bound paromomycin (A1555G mutant, Br-derivative)X-RAY DIFFRACTION2.122
63BNQ|1|A+3BNQ|1|BCrystal Structure of the Homo sapiens Mitochondrial Ribosomal Decoding Site in the Presence of SrCl2 (A1555G mutant, Br-derivative)X-RAY DIFFRACTION222
73TD0|1|B+3TD0|1|ACrystal structure of the bacterial A1408G-mutant and the protozoa cytoplasmic ribosomal decoding siteX-RAY DIFFRACTION1.622
83TD1|1|B+3TD1|1|ACrystal structure of the bacterial A1408G-mutant and the protozoa cytoplasmic ribosomal decoding site in complex with geneticinX-RAY DIFFRACTION2.122
93WRU|1|A+3WRU|1|BCrystal structure of the bacterial ribosomal decoding site in complex with synthetic aminoglycoside with F-HABA groupX-RAY DIFFRACTION2.321
102FQN|1|A+2FQN|1|BCrystal structure of the Homo sapiens cytoplasmic ribosomal decoding A siteX-RAY DIFFRACTION2.322
114K31|1|B+4K31|1|CCrystal structure of apramycin bound to the leishmanial rRNA A-siteX-RAY DIFFRACTION1.4122
124K32|1|A+4K32|1|BCrystal structure of geneticin bound to the leishmanial rRNA A-siteX-RAY DIFFRACTION2.521
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