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Equivalence class NR_2.5_43554.4 Obsolete

#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. ÅDate
13TD1|1|B+ 3TD1|1|A (rep)RNA (5'-R(*UP*UP*GP*CP*GP*UP*CP*GP*CP*GP*(5BU)P*CP*GP*AP*CP*GP*AP*AP*GP*UP*CP*GP*C)-3')Crystal structure of the bacterial A1408G-mutant and the protozoa cytoplasmic ribosomal decoding site in complex with geneticinX-ray diffraction2.12011-12-07
23BNS|1|A+ 3BNS|1|BA site of human mitochondrial ribosome, chain three, A site of human mitochondrial ribosome, chain twoCrystal Structure of the Homo sapiens Mitochondrial Ribosomal Decoding Site (A1555G mutant, Br-derivative)X-ray diffraction1.92008-06-24
33BNR|1|A+ 3BNR|1|BA site of human mitochondrial ribosome, chain one, A site of human mitochondrial ribosome, chain twoCrystal Structure of the Homo sapiens Mitochondrial Ribosomal Decoding Site in the presence of nonspecifically bound paromomycin (A1555G mutant, Br-derivative)X-ray diffraction2.12008-06-24
43BNQ|1|A+ 3BNQ|1|BA site of human mitochondrial ribosome, A chainCrystal Structure of the Homo sapiens Mitochondrial Ribosomal Decoding Site in the Presence of SrCl2 (A1555G mutant, Br-derivative)X-ray diffraction22008-06-24
52FQN|1|A+ 2FQN|1|B5'-R(*UP*UP*GP*CP*GP*UP*CP*GP*CP*UP*CP*CP*GP*GP*AP*AP*AP*AP*GP*UP*CP*GP*C)-3'Crystal structure of the Homo sapiens cytoplasmic ribosomal decoding A siteX-ray diffraction2.32006-02-14
63TD0|1|B+ 3TD0|1|ARNA (5'-R(*UP*UP*GP*CP*GP*UP*CP*GP*CP*GP*(5BU)P*CP*GP*AP*CP*GP*AP*AP*GP*UP*CP*GP*C)-3')Crystal structure of the bacterial A1408G-mutant and the protozoa cytoplasmic ribosomal decoding siteX-ray diffraction1.62011-12-07
74K31|1|B+ 4K31|1|CRNA (5'-R(*UP*UP*GP*CP*GP*UP*CP*GP*UP*UP*CP*CP*GP*GP*AP*AP*AP*AP*GP*UP*CP*GP*C)-3')LeishmaniaEukaryaCrystal structure of apramycin bound to the leishmanial rRNA A-siteX-ray diffraction1.412013-07-31
83BNR|1|C+ 3BNR|1|DA site of human mitochondrial ribosome, chain one, A site of human mitochondrial ribosome, chain threeCrystal Structure of the Homo sapiens Mitochondrial Ribosomal Decoding Site in the presence of nonspecifically bound paromomycin (A1555G mutant, Br-derivative)X-ray diffraction2.12008-06-24
93BNQ|1|C+ 3BNQ|1|DA site of human mitochondrial ribosome, A chain, A site of human mitochondrial ribosome, B chainCrystal Structure of the Homo sapiens Mitochondrial Ribosomal Decoding Site in the Presence of SrCl2 (A1555G mutant, Br-derivative)X-ray diffraction22008-06-24
103BNS|1|C+ 3BNS|1|DA site of human mitochondrial ribosome, chain threeCrystal Structure of the Homo sapiens Mitochondrial Ribosomal Decoding Site (A1555G mutant, Br-derivative)X-ray diffraction1.92008-06-24
113WRU|1|A+ 3WRU|1|BRNA (5'-R(*UP*UP*GP*CP*GP*UP*CP*AP*CP*GP*CP*CP*GP*GP*CP*GP*AP*AP*GP*UP*CP*GP*C)-3')Crystal structure of the bacterial ribosomal decoding site in complex with synthetic aminoglycoside with F-HABA groupX-ray diffraction2.32014-11-05
124WCQ|1|A+ 4WCQ|1|BRNA (5'-R(*UP*UP*GP*CP*GP*UP*CP*(1MA)P*CP*GP*UP*CP*GP*AP*CP*GP*AP*AP*GP*UP*CP*GP*C)-3')Crystal structure of the bacterial A1408me1A-mutant ribosomal decoding site in complex with geneticinX-ray diffraction2.12015-09-09
134K32|1|A+ 4K32|1|BRNA (5'-R(*UP*UP*GP*CP*GP*UP*CP*GP*UP*UP*CP*CP*GP*GP*AP*AP*AP*AP*GP*UP*CP*GP*C)-3')LeishmaniaEukaryaCrystal structure of geneticin bound to the leishmanial rRNA A-siteX-ray diffraction2.52013-07-31
144P3S|1|B+ 4P3S|1|A5'-R(*UP*UP*GP*CP*GP*UP*CP*CP*CP*GP*(5BU)P*CP*GP*AP*CP*GP*AP*AP*GP*UP*CP*GP*C)-3'synthetic constructSyntheticCrystal structure of the bacterial A1408C-mutant ribosomal decoding site in complex with geneticinX-ray diffraction2.32016-05-04

Release history

Release2.742.752.762.772.782.792.802.812.822.832.842.852.862.872.882.892.902.912.92
Date2016-05-062016-05-132016-05-202016-05-272016-06-032016-06-102016-06-172016-06-242016-07-012016-07-082016-07-152016-07-222016-07-292016-08-052016-08-122016-08-192016-08-262016-09-022016-09-09

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent
NR_2.5_43554.4NR_all_43554.32.74(13) 4K31|1|B+4K31|1|C, 3TD0|1|B+3TD0|1|A, 3BNR|1|A+3BNR|1|B, 4WCQ|1|A+4WCQ|1|B, 3TD1|1|B+3TD1|1|A, 3BNS|1|A+3BNS|1|B, 3BNQ|1|A+3BNQ|1|B, 3BNS|1|C+3BNS|1|D, 3BNQ|1|C+3BNQ|1|D, 3BNR|1|C+3BNR|1|D, 2FQN|1|A+2FQN|1|B, 4K32|1|A+4K32|1|B, 3WRU|1|A+3WRU|1|B(1) 4P3S|1|B+4P3S|1|A(16) 2O3W|1|A+2O3W|1|B, 2O3Y|1|A+2O3Y|1|B, 1YRJ|1|A+1YRJ|1|B, 4WCS|1|A+4WCS|1|B, 4GPX|1|A+4GPX|1|B, 2F4T|1|B+2F4T|1|A, 4P20|1|A+4P20|1|B, 2O3V|1|A+2O3V|1|B, 4WCR|1|A+4WCR|1|B, 2O3X|1|A+2O3X|1|B, 1LC4|1|A+1LC4|1|B, 4GPW|1|A+4GPW|1|B, 2ESI|1|A+2ESI|1|B, 4GPY|1|A+4GPY|1|B, 2G5K|1|A+2G5K|1|B, 4PDQ|1|A+4PDQ|1|B

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child
NR_2.5_43554.4NR_2.5_38099.12.93(6) 3BNQ|1|A+3BNQ|1|B, 3BNQ|1|C+3BNQ|1|D, 3BNR|1|A+3BNR|1|B, 3BNR|1|C+3BNR|1|D, 3BNS|1|A+3BNS|1|B, 3BNS|1|C+3BNS|1|D(8) 3WRU|1|A+3WRU|1|B, 4WCQ|1|A+4WCQ|1|B, 3TD1|1|B+3TD1|1|A, 4P3S|1|B+4P3S|1|A, 3TD0|1|B+3TD0|1|A, 4K32|1|A+4K32|1|B, 2FQN|1|A+2FQN|1|B, 4K31|1|B+4K31|1|C(0)
NR_2.5_43554.4NR_2.5_52761.12.93(1) 3TD0|1|B+3TD0|1|A(13) 3BNR|1|A+3BNR|1|B, 3TD1|1|B+3TD1|1|A, 4P3S|1|B+4P3S|1|A, 3BNQ|1|C+3BNQ|1|D, 3BNS|1|C+3BNS|1|D, 4K32|1|A+4K32|1|B, 3BNQ|1|A+3BNQ|1|B, 3BNS|1|A+3BNS|1|B, 4K31|1|B+4K31|1|C, 2FQN|1|A+2FQN|1|B, 3BNR|1|C+3BNR|1|D, 3WRU|1|A+3WRU|1|B, 4WCQ|1|A+4WCQ|1|B(0)
NR_2.5_43554.4NR_2.5_54657.12.93(1) 2FQN|1|A+2FQN|1|B(13) 3BNR|1|A+3BNR|1|B, 3TD0|1|B+3TD0|1|A, 4K32|1|A+4K32|1|B, 3BNQ|1|C+3BNQ|1|D, 3BNS|1|C+3BNS|1|D, 4K31|1|B+4K31|1|C, 3BNS|1|A+3BNS|1|B, 3WRU|1|A+3WRU|1|B, 4WCQ|1|A+4WCQ|1|B, 3BNQ|1|A+3BNQ|1|B, 3BNR|1|C+3BNR|1|D, 3TD1|1|B+3TD1|1|A, 4P3S|1|B+4P3S|1|A(0)
NR_2.5_43554.4NR_2.5_77275.12.93(1) 4K31|1|B+4K31|1|C(13) 3BNQ|1|A+3BNQ|1|B, 3BNS|1|A+3BNS|1|B, 3WRU|1|A+3WRU|1|B, 2FQN|1|A+2FQN|1|B, 3BNR|1|C+3BNR|1|D, 3TD1|1|B+3TD1|1|A, 4WCQ|1|A+4WCQ|1|B, 3BNR|1|A+3BNR|1|B, 3TD0|1|B+3TD0|1|A, 4P3S|1|B+4P3S|1|A, 3BNQ|1|C+3BNQ|1|D, 3BNS|1|C+3BNS|1|D, 4K32|1|A+4K32|1|B(0)
NR_2.5_43554.4NR_2.5_97151.12.93(5) 3WRU|1|A+3WRU|1|B, 3TD1|1|B+3TD1|1|A, 4K32|1|A+4K32|1|B, 4P3S|1|B+4P3S|1|A, 4WCQ|1|A+4WCQ|1|B(9) 3BNS|1|A+3BNS|1|B, 2FQN|1|A+2FQN|1|B, 3BNR|1|C+3BNR|1|D, 4K31|1|B+4K31|1|C, 3BNR|1|A+3BNR|1|B, 3TD0|1|B+3TD0|1|A, 3BNQ|1|C+3BNQ|1|D, 3BNS|1|C+3BNS|1|D, 3BNQ|1|A+3BNQ|1|B(8) 2ET5|1|A+2ET5|1|B, 2PWT|1|A+2PWT|1|B, 4F8U|1|A+4F8U|1|B, 4WCP|1|A+4WCP|1|B+4WCP|1|C, 1J7T|1|A+1J7T|1|B, 1MWL|1|A+1MWL|1|B, 2ESJ|1|A+2ESJ|1|B, 2ET4|1|A+2ET4|1|B

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#SPDBTitleMethodResolutionLength
13BNQ|1|C+3BNQ|1|DCrystal Structure of the Homo sapiens Mitochondrial Ribosomal Decoding Site in the Presence of SrCl2 (A1555G mutant, Br-derivative)X-RAY DIFFRACTION222
23BNR|1|C+3BNR|1|DCrystal Structure of the Homo sapiens Mitochondrial Ribosomal Decoding Site in the presence of nonspecifically bound paromomycin (A1555G mutant, Br-derivative)X-RAY DIFFRACTION2.122
33BNS|1|C+3BNS|1|DCrystal Structure of the Homo sapiens Mitochondrial Ribosomal Decoding Site (A1555G mutant, Br-derivative)X-RAY DIFFRACTION1.922
43BNS|1|A+3BNS|1|BCrystal Structure of the Homo sapiens Mitochondrial Ribosomal Decoding Site (A1555G mutant, Br-derivative)X-RAY DIFFRACTION1.922
53BNR|1|A+3BNR|1|BCrystal Structure of the Homo sapiens Mitochondrial Ribosomal Decoding Site in the presence of nonspecifically bound paromomycin (A1555G mutant, Br-derivative)X-RAY DIFFRACTION2.122
63BNQ|1|A+3BNQ|1|BCrystal Structure of the Homo sapiens Mitochondrial Ribosomal Decoding Site in the Presence of SrCl2 (A1555G mutant, Br-derivative)X-RAY DIFFRACTION222
73TD0|1|B+3TD0|1|ACrystal structure of the bacterial A1408G-mutant and the protozoa cytoplasmic ribosomal decoding siteX-RAY DIFFRACTION1.622
83TD1|1|B+3TD1|1|ACrystal structure of the bacterial A1408G-mutant and the protozoa cytoplasmic ribosomal decoding site in complex with geneticinX-RAY DIFFRACTION2.122
94P3S|1|B+4P3S|1|ACrystal structure of the bacterial A1408C-mutant ribosomal decoding site in complex with geneticinX-RAY DIFFRACTION2.321
104WCQ|1|A+4WCQ|1|BCrystal structure of the bacterial A1408me1A-mutant ribosomal decoding site in complex with geneticinX-RAY DIFFRACTION2.121
113WRU|1|A+3WRU|1|BCrystal structure of the bacterial ribosomal decoding site in complex with synthetic aminoglycoside with F-HABA groupX-RAY DIFFRACTION2.321
122FQN|1|A+2FQN|1|BCrystal structure of the Homo sapiens cytoplasmic ribosomal decoding A siteX-RAY DIFFRACTION2.322
134K31|1|B+4K31|1|CCrystal structure of apramycin bound to the leishmanial rRNA A-siteX-RAY DIFFRACTION1.4122
144K32|1|A+4K32|1|BCrystal structure of geneticin bound to the leishmanial rRNA A-siteX-RAY DIFFRACTION2.521
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