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Equivalence class NR_2.5_56726.92 Obsolete

#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. ÅDate
14YBB|1|AA (rep)Small subunit ribosomal RNA16S rRNAEscherichia coliBacteriaRF00177High-resolution structure of the Escherichia coli ribosomeX-ray diffraction2.12015-03-18
24YBB|1|BASmall subunit ribosomal RNA16S rRNAEscherichia coliBacteriaRF00177High-resolution structure of the Escherichia coli ribosomeX-ray diffraction2.12015-03-18
38B0X|1|ASmall subunit ribosomal RNA16S rRNAEscherichia coli BBacteriaRF00177Translating 70S ribosome in the unrotated state (P and E, tRNAs)Electron microscopy1.552022-11-30
47K00|1|ASmall subunit ribosomal RNA16S rRNAEscherichia coliBacteriaRF00177Structure of the Bacterial Ribosome at 2 Angstrom ResolutionElectron microscopy1.982020-09-23
57S1H|1|CSmall subunit ribosomal RNA16S rRNAEscherichia coliBacteriaRF00177Wild-type Escherichia coli ribosome with antibiotic linezolidElectron microscopy2.352021-11-17
67N1P|1|16Small subunit ribosomal RNA16S rRNA, mRNAEscherichia coli K-12BacteriaRF00177Elongating 70S ribosome complex in a classical pre-translocation (PRE-C) conformationElectron microscopy2.332021-07-14
77S1K|1|CSmall subunit ribosomal RNA16S rRNAEscherichia coliBacteriaRF00177Cfr-modified Escherichia coli stalled ribosome with antibiotic radezolidElectron microscopy2.422022-01-19
87S1J|1|CSmall subunit ribosomal RNA16S rRNAEscherichia coliBacteriaRF00177Wild-type Escherichia coli ribosome with antibiotic radezolidElectron microscopy2.472022-03-02
97S1I|1|CSmall subunit ribosomal RNA16S rRNAEscherichia coliBacteriaRF00177Wild-type Escherichia coli stalled ribosome with antibiotic radezolidElectron microscopy2.482022-03-02
107S1G|1|CSmall subunit ribosomal RNA16S rRNAEscherichia coliBacteriaRF00177wild-type Escherichia coli stalled ribosome with antibiotic linezolidElectron microscopy2.482021-11-17
117O1A|1|AASmall subunit ribosomal RNARibosomal RNA 16SEscherichia coli K-12BacteriaRF00177Cryo-EM structure of an Escherichia coli TnaC(R23F)-ribosome complex stalled in response to L-tryptophanElectron microscopy2.42021-09-01
127PJS|1|aSmall subunit ribosomal RNA16S ribosomal RNAEscherichia coliBacteriaRF00177Structure of the 70S ribosome with tRNAs in the classical pre-translocation state and apramycin (C)Electron microscopy2.352021-10-20

Release history

Release3.2603.2613.2623.2633.2643.2653.266
Date2022-12-072022-12-142022-12-212022-12-282023-01-042023-01-112023-01-18

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent
NR_2.5_56726.92NR_2.5_56726.913.260(12) 4YBB|1|AA, 7S1K|1|C, 7S1J|1|C, 7S1I|1|C, 7S1H|1|C, 7S1G|1|C, 7PJS|1|a, 7O1A|1|AA, 7N1P|1|16, 7K00|1|A, 4YBB|1|BA, 8B0X|1|A(0) (0)

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child
NR_2.5_56726.92NR_2.5_56726.933.267(12) 4YBB|1|AA, 7S1K|1|C, 7S1J|1|C, 7S1I|1|C, 7S1H|1|C, 7S1G|1|C, 7PJS|1|a, 7O1A|1|AA, 7N1P|1|16, 7K00|1|A, 4YBB|1|BA, 8B0X|1|A(0) (0)

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#SPDBTitleMethodResolutionLength
17PJS|1|aStructure of the 70S ribosome with tRNAs in the classical pre-translocation state and apramycin (C)ELECTRON MICROSCOPY2.35660
27K00|1|AStructure of the Bacterial Ribosome at 2 Angstrom ResolutionELECTRON MICROSCOPY1.981508
37N1P|1|16Elongating 70S ribosome complex in a classical pre-translocation (PRE-C) conformationELECTRON MICROSCOPY2.331531
47O1A|1|AACryo-EM structure of an Escherichia coli TnaC(R23F)-ribosome complex stalled in response to L-tryptophanELECTRON MICROSCOPY2.41523
58B0X|1|ATranslating 70S ribosome in the unrotated state (P and E, tRNAs)ELECTRON MICROSCOPY1.551489
67S1I|1|CWild-type Escherichia coli stalled ribosome with antibiotic radezolidELECTRON MICROSCOPY2.481540
77S1G|1|Cwild-type Escherichia coli stalled ribosome with antibiotic linezolidELECTRON MICROSCOPY2.481540
87S1H|1|CWild-type Escherichia coli ribosome with antibiotic linezolidELECTRON MICROSCOPY2.351540
97S1K|1|CCfr-modified Escherichia coli stalled ribosome with antibiotic radezolidELECTRON MICROSCOPY2.421540
107S1J|1|CWild-type Escherichia coli ribosome with antibiotic radezolidELECTRON MICROSCOPY2.471540
114YBB|1|BAHigh-resolution structure of the Escherichia coli ribosomeX-RAY DIFFRACTION2.11522
124YBB|1|AAHigh-resolution structure of the Escherichia coli ribosomeX-RAY DIFFRACTION2.11523
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