Equivalence class NR_2.5_65223.4 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 6Q1H|1|D (rep) | RNA (5'-R(P*AP*AP*A)-3') | Pseudomonas aeruginosa | Bacteria | Structure of P. aeruginosa ATCC27853 NucC, cAAA-bound form | X-ray diffraction | 1.45 | 2019-12-25 | ||
| 2 | 6Q1H|1|H | RNA (5'-R(P*AP*AP*A)-3') | Pseudomonas aeruginosa | Bacteria | Structure of P. aeruginosa ATCC27853 NucC, cAAA-bound form | X-ray diffraction | 1.45 | 2019-12-25 | ||
| 3 | 6P7P|1|F | Cyclic tri-AMP (5'-3' linked) | Escherichia coli | Bacteria | Structure of E. coli MS115-1 NucC, cAAA-bound form | X-ray diffraction | 1.66 | 2019-12-25 | ||
| 4 | 6P7P|1|E | Cyclic tri-AMP (5'-3' linked) | Escherichia coli | Bacteria | Structure of E. coli MS115-1 NucC, cAAA-bound form | X-ray diffraction | 1.66 | 2019-12-25 | ||
| 5 | 6P7P|1|D | Cyclic tri-AMP (5'-3' linked) | Escherichia coli | Bacteria | Structure of E. coli MS115-1 NucC, cAAA-bound form | X-ray diffraction | 1.66 | 2019-12-25 | ||
| 6 | 6VM6|1|J | 2'-5'-Linked Cyclic RNA (5'-R(P*AP*AP*A)-3') | synthetic construct | Synthetic | Structure of Acinetobacter baumannii Cap4 SAVED/CARF-domain containing receptor with the cyclic trinucleotide 2'3'3'-cAAA | X-ray diffraction | 2.1 | 2020-06-17 | ||
| 7 | 6VM6|1|G | 2'-5'-Linked Cyclic RNA (5'-R(P*AP*AP*A)-3') | synthetic construct | Synthetic | Structure of Acinetobacter baumannii Cap4 SAVED/CARF-domain containing receptor with the cyclic trinucleotide 2'3'3'-cAAA | X-ray diffraction | 2.1 | 2020-06-17 | ||
| 8 | 6WAN|1|K | Cyclic RNA (R(P*AP*AP*A) | synthetic construct | Synthetic | Structure of Acinetobacter baumannii Cap4 SAVED/CARF-domain containing receptor with the cyclic trinucleotide 3'3'3'-cAAA | X-ray diffraction | 2.4 | 2020-06-17 | ||
| 9 | 6WAN|1|H | Cyclic RNA (R(P*AP*AP*A) | synthetic construct | Synthetic | Structure of Acinetobacter baumannii Cap4 SAVED/CARF-domain containing receptor with the cyclic trinucleotide 3'3'3'-cAAA | X-ray diffraction | 2.4 | 2020-06-17 | ||
| 10 | 6WAN|1|G | Cyclic RNA (R(P*AP*AP*A) | synthetic construct | Synthetic | Structure of Acinetobacter baumannii Cap4 SAVED/CARF-domain containing receptor with the cyclic trinucleotide 3'3'3'-cAAA | X-ray diffraction | 2.4 | 2020-06-17 | ||
| 11 | 6WAN|1|L | Cyclic RNA (R(P*AP*AP*A) | synthetic construct | Synthetic | Structure of Acinetobacter baumannii Cap4 SAVED/CARF-domain containing receptor with the cyclic trinucleotide 3'3'3'-cAAA | X-ray diffraction | 2.4 | 2020-06-17 | ||
| 12 | 6WAN|1|I | Cyclic RNA (R(P*AP*AP*A) | synthetic construct | Synthetic | Structure of Acinetobacter baumannii Cap4 SAVED/CARF-domain containing receptor with the cyclic trinucleotide 3'3'3'-cAAA | X-ray diffraction | 2.4 | 2020-06-17 | ||
| 13 | 6YWO|1|F | RNA (5'-R(*AP*AP*A)-3') | synthetic construct | Synthetic | CutA in complex with A3 RNA | X-ray diffraction | 1.9 | 2020-08-05 | ||
| 14 | 6WAN|1|J | Cyclic RNA (R(P*AP*AP*A) | synthetic construct | Synthetic | Structure of Acinetobacter baumannii Cap4 SAVED/CARF-domain containing receptor with the cyclic trinucleotide 3'3'3'-cAAA | X-ray diffraction | 2.4 | 2020-06-17 | ||
| 15 | 6YWO|1|E | RNA (5'-R(*AP*AP*A)-3') | synthetic construct | Synthetic | CutA in complex with A3 RNA | X-ray diffraction | 1.9 | 2020-08-05 | ||
| 16 | 6YWO|1|K | RNA (5'-R(*AP*AP*A)-3') | synthetic construct | Synthetic | CutA in complex with A3 RNA | X-ray diffraction | 1.9 | 2020-08-05 | ||
| 17 | 6VM6|1|I | 2'-5'-Linked Cyclic RNA (5'-R(P*AP*AP*A)-3') | synthetic construct | Synthetic | Structure of Acinetobacter baumannii Cap4 SAVED/CARF-domain containing receptor with the cyclic trinucleotide 2'3'3'-cAAA | X-ray diffraction | 2.1 | 2020-06-17 | ||
| 18 | 6VM6|1|H | 2'-5'-Linked Cyclic RNA (5'-R(P*AP*AP*A)-3') | synthetic construct | Synthetic | Structure of Acinetobacter baumannii Cap4 SAVED/CARF-domain containing receptor with the cyclic trinucleotide 2'3'3'-cAAA | X-ray diffraction | 2.1 | 2020-06-17 | ||
| 19 | 6YWO|1|I | RNA (5'-R(*AP*AP*A)-3') | synthetic construct | Synthetic | CutA in complex with A3 RNA | X-ray diffraction | 1.9 | 2020-08-05 | ||
| 20 | 3GPQ|1|E | RNA (5'-R(*AP*AP*A)-3') | Crystal structure of macro domain of Chikungunya virus in complex with RNA | X-ray diffraction | 2 | 2009-07-21 | ||||
| 21 | 3GPQ|1|F | RNA (5'-R(*AP*AP*A)-3') | Crystal structure of macro domain of Chikungunya virus in complex with RNA | X-ray diffraction | 2 | 2009-07-21 | ||||
| 22 | 6VM6|1|K | 2'-5'-Linked Cyclic RNA (5'-R(P*AP*AP*A)-3') | synthetic construct | Synthetic | Structure of Acinetobacter baumannii Cap4 SAVED/CARF-domain containing receptor with the cyclic trinucleotide 2'3'3'-cAAA | X-ray diffraction | 2.1 | 2020-06-17 |
Release history
| Release | 3.146 | 3.147 | 3.148 | 3.149 | 3.150 | 3.151 | 3.152 | 3.153 | 3.154 | 3.155 | 3.156 | 3.157 | 3.158 | 3.159 | 3.160 | 3.161 | 3.162 | 3.163 | 3.164 | 3.165 | 3.166 | 3.167 | 3.168 | 3.169 | 3.170 | 3.171 | 3.172 | 3.173 | 3.174 | 3.175 | 3.176 | 3.177 | 3.178 | 3.179 | 3.180 | 3.181 | 3.182 | 3.183 | 3.184 | 3.185 | 3.186 | 3.187 | 3.188 | 3.189 | 3.190 | 3.191 | 3.192 | 3.193 | 3.194 | 3.195 | 3.196 | 3.197 | 3.198 | 3.199 | 3.200 | 3.201 | 3.202 | 3.203 | 3.204 | 3.205 | 3.206 | 3.207 | 3.208 | 3.209 | 3.210 | 3.211 | 3.212 | 3.213 | 3.214 | 3.215 | 3.216 | 3.217 | 3.218 | 3.219 | 3.220 | 3.221 | 3.222 | 3.223 | 3.224 | 3.225 | 3.226 | 3.227 | 3.228 | 3.229 | 3.230 | 3.231 | 3.232 | 3.233 | 3.234 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2020-09-30 | 2020-10-07 | 2020-10-14 | 2020-10-21 | 2020-10-28 | 2020-11-04 | 2020-11-11 | 2020-11-18 | 2020-11-25 | 2020-12-02 | 2020-12-09 | 2020-12-16 | 2020-12-23 | 2020-12-30 | 2021-01-06 | 2021-01-13 | 2021-01-20 | 2021-01-27 | 2021-02-03 | 2021-02-10 | 2021-02-17 | 2021-02-24 | 2021-03-03 | 2021-03-10 | 2021-03-17 | 2021-03-24 | 2021-03-31 | 2021-04-07 | 2021-04-14 | 2021-04-21 | 2021-04-28 | 2021-05-05 | 2021-05-12 | 2021-05-19 | 2021-05-26 | 2021-06-02 | 2021-06-09 | 2021-06-16 | 2021-06-23 | 2021-06-30 | 2021-07-07 | 2021-07-14 | 2021-07-21 | 2021-07-28 | 2021-08-04 | 2021-08-11 | 2021-08-18 | 2021-08-25 | 2021-09-01 | 2021-09-08 | 2021-09-15 | 2021-09-22 | 2021-09-29 | 2021-10-06 | 2021-10-13 | 2021-10-20 | 2021-10-27 | 2021-11-03 | 2021-11-10 | 2021-11-17 | 2021-11-24 | 2021-12-01 | 2021-12-08 | 2021-12-15 | 2021-12-22 | 2021-12-29 | 2022-01-05 | 2022-01-12 | 2022-01-19 | 2022-01-26 | 2022-02-02 | 2022-02-09 | 2022-02-16 | 2022-02-23 | 2022-03-02 | 2022-03-09 | 2022-03-16 | 2022-03-23 | 2022-03-30 | 2022-04-06 | 2022-04-13 | 2022-04-20 | 2022-04-27 | 2022-05-04 | 2022-05-11 | 2022-05-18 | 2022-05-25 | 2022-06-01 | 2022-06-08 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|---|---|---|---|---|
| NR_2.5_65223.4 | NR_2.5_65223.3 | 3.146 | (22) 3GPQ|1|E, 6WAN|1|G, 6WAN|1|H, 6WAN|1|I, 6WAN|1|J, 6WAN|1|K, 6WAN|1|L, 6YWO|1|E, 6YWO|1|F, 6YWO|1|I, 6VM6|1|K, 6VM6|1|J, 3GPQ|1|F, 6P7P|1|D, 6P7P|1|E, 6P7P|1|F, 6Q1H|1|D, 6Q1H|1|H, 6VM6|1|G, 6VM6|1|H, 6VM6|1|I, 6YWO|1|K | (0) | (0) |
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|---|---|---|---|---|
| NR_2.5_65223.4 | NR_2.5_65223.5 | 3.235 | (22) 3GPQ|1|E, 6WAN|1|G, 6WAN|1|H, 6WAN|1|I, 6WAN|1|J, 6WAN|1|K, 6WAN|1|L, 6YWO|1|E, 6YWO|1|F, 6YWO|1|I, 6VM6|1|K, 6VM6|1|J, 3GPQ|1|F, 6P7P|1|D, 6P7P|1|E, 6P7P|1|F, 6Q1H|1|D, 6Q1H|1|H, 6VM6|1|G, 6VM6|1|H, 6VM6|1|I, 6YWO|1|K | (0) | (0) |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|
| 1 | 3GPQ|1|F | Crystal structure of macro domain of Chikungunya virus in complex with RNA | X-RAY DIFFRACTION | 2 | 2 |
| 2 | 3GPQ|1|E | Crystal structure of macro domain of Chikungunya virus in complex with RNA | X-RAY DIFFRACTION | 2 | 2 |
| 3 | 6WAN|1|L | Structure of Acinetobacter baumannii Cap4 SAVED/CARF-domain containing receptor with the cyclic trinucleotide 3'3'3'-cAAA | X-RAY DIFFRACTION | 2.4 | 3 |
| 4 | 6WAN|1|H | Structure of Acinetobacter baumannii Cap4 SAVED/CARF-domain containing receptor with the cyclic trinucleotide 3'3'3'-cAAA | X-RAY DIFFRACTION | 2.4 | 3 |
| 5 | 6WAN|1|I | Structure of Acinetobacter baumannii Cap4 SAVED/CARF-domain containing receptor with the cyclic trinucleotide 3'3'3'-cAAA | X-RAY DIFFRACTION | 2.4 | 3 |
| 6 | 6WAN|1|J | Structure of Acinetobacter baumannii Cap4 SAVED/CARF-domain containing receptor with the cyclic trinucleotide 3'3'3'-cAAA | X-RAY DIFFRACTION | 2.4 | 3 |
| 7 | 6WAN|1|K | Structure of Acinetobacter baumannii Cap4 SAVED/CARF-domain containing receptor with the cyclic trinucleotide 3'3'3'-cAAA | X-RAY DIFFRACTION | 2.4 | 3 |
| 8 | 6P7P|1|E | Structure of E. coli MS115-1 NucC, cAAA-bound form | X-RAY DIFFRACTION | 1.66 | 3 |
| 9 | 6P7P|1|F | Structure of E. coli MS115-1 NucC, cAAA-bound form | X-RAY DIFFRACTION | 1.66 | 3 |
| 10 | 6P7P|1|D | Structure of E. coli MS115-1 NucC, cAAA-bound form | X-RAY DIFFRACTION | 1.66 | 3 |
| 11 | 6Q1H|1|H | Structure of P. aeruginosa ATCC27853 NucC, cAAA-bound form | X-RAY DIFFRACTION | 1.45 | 3 |
| 12 | 6Q1H|1|D | Structure of P. aeruginosa ATCC27853 NucC, cAAA-bound form | X-RAY DIFFRACTION | 1.45 | 3 |
| 13 | 6VM6|1|H | Structure of Acinetobacter baumannii Cap4 SAVED/CARF-domain containing receptor with the cyclic trinucleotide 2'3'3'-cAAA | X-RAY DIFFRACTION | 2.1 | 3 |
| 14 | 6VM6|1|K | Structure of Acinetobacter baumannii Cap4 SAVED/CARF-domain containing receptor with the cyclic trinucleotide 2'3'3'-cAAA | X-RAY DIFFRACTION | 2.1 | 3 |
| 15 | 6VM6|1|G | Structure of Acinetobacter baumannii Cap4 SAVED/CARF-domain containing receptor with the cyclic trinucleotide 2'3'3'-cAAA | X-RAY DIFFRACTION | 2.1 | 3 |
| 16 | 6VM6|1|I | Structure of Acinetobacter baumannii Cap4 SAVED/CARF-domain containing receptor with the cyclic trinucleotide 2'3'3'-cAAA | X-RAY DIFFRACTION | 2.1 | 3 |
| 17 | 6VM6|1|J | Structure of Acinetobacter baumannii Cap4 SAVED/CARF-domain containing receptor with the cyclic trinucleotide 2'3'3'-cAAA | X-RAY DIFFRACTION | 2.1 | 3 |
| 18 | 6WAN|1|G | Structure of Acinetobacter baumannii Cap4 SAVED/CARF-domain containing receptor with the cyclic trinucleotide 3'3'3'-cAAA | X-RAY DIFFRACTION | 2.4 | 3 |
| 19 | 6YWO|1|E | CutA in complex with A3 RNA | X-RAY DIFFRACTION | 1.9 | 3 |
| 20 | 6YWO|1|I | CutA in complex with A3 RNA | X-RAY DIFFRACTION | 1.9 | 3 |
| 21 | 6YWO|1|F | CutA in complex with A3 RNA | X-RAY DIFFRACTION | 1.9 | 3 |
| 22 | 6YWO|1|K | CutA in complex with A3 RNA | X-RAY DIFFRACTION | 1.9 | 3 |