Equivalence class NR_2.5_65223.6 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 6Q1H|1|D (rep) | RNA (5'-R(P*AP*AP*A)-3') | Pseudomonas aeruginosa | Structure of P. aeruginosa ATCC27853 NucC, cAAA-bound form | X-ray diffraction | 1.45 | 2019-12-25 | |||
| 2 | 6Q1H|1|H | RNA (5'-R(P*AP*AP*A)-3') | Pseudomonas aeruginosa | Structure of P. aeruginosa ATCC27853 NucC, cAAA-bound form | X-ray diffraction | 1.45 | 2019-12-25 | |||
| 3 | 6P7P|1|F | Cyclic tri-AMP (5'-3' linked) | Escherichia coli | Structure of E. coli MS115-1 NucC, cAAA-bound form | X-ray diffraction | 1.66 | 2019-12-25 | |||
| 4 | 6P7P|1|E | Cyclic tri-AMP (5'-3' linked) | Escherichia coli | Structure of E. coli MS115-1 NucC, cAAA-bound form | X-ray diffraction | 1.66 | 2019-12-25 | |||
| 5 | 6P7P|1|D | Cyclic tri-AMP (5'-3' linked) | Escherichia coli | Structure of E. coli MS115-1 NucC, cAAA-bound form | X-ray diffraction | 1.66 | 2019-12-25 | |||
| 6 | 7SOQ|1|B | RNA (5'-R(*AP*AP*A)-3') | synthetic construct | LaM domain of human LARP1 in complex with AAA RNA | X-ray diffraction | 1.15 | 2022-08-03 | |||
| 7 | 7SOR|1|D | RNA (5'-R(*AP*AP*A)-3') | synthetic construct | LaM domain of human LARP1 in complex with AAA RNA | X-ray diffraction | 1.35 | 2022-08-03 | |||
| 8 | 7SOR|1|B | RNA (5'-R(*AP*AP*A)-3') | synthetic construct | LaM domain of human LARP1 in complex with AAA RNA | X-ray diffraction | 1.35 | 2022-08-03 | |||
| 9 | 6VM6|1|J | 2'-5'-Linked Cyclic RNA (5'-R(P*AP*AP*A)-3') | synthetic construct | Structure of Acinetobacter baumannii Cap4 SAVED/CARF-domain containing receptor with the cyclic trinucleotide 2'3'3'-cAAA | X-ray diffraction | 2.1 | 2020-06-17 | |||
| 10 | 6VM6|1|G | 2'-5'-Linked Cyclic RNA (5'-R(P*AP*AP*A)-3') | synthetic construct | Structure of Acinetobacter baumannii Cap4 SAVED/CARF-domain containing receptor with the cyclic trinucleotide 2'3'3'-cAAA | X-ray diffraction | 2.1 | 2020-06-17 | |||
| 11 | 6WAN|1|K | Cyclic RNA (R(P*AP*AP*A) | synthetic construct | Structure of Acinetobacter baumannii Cap4 SAVED/CARF-domain containing receptor with the cyclic trinucleotide 3'3'3'-cAAA | X-ray diffraction | 2.4 | 2020-06-17 | |||
| 12 | 6WAN|1|H | Cyclic RNA (R(P*AP*AP*A) | synthetic construct | Structure of Acinetobacter baumannii Cap4 SAVED/CARF-domain containing receptor with the cyclic trinucleotide 3'3'3'-cAAA | X-ray diffraction | 2.4 | 2020-06-17 | |||
| 13 | 6WAN|1|G | Cyclic RNA (R(P*AP*AP*A) | synthetic construct | Structure of Acinetobacter baumannii Cap4 SAVED/CARF-domain containing receptor with the cyclic trinucleotide 3'3'3'-cAAA | X-ray diffraction | 2.4 | 2020-06-17 | |||
| 14 | 6WAN|1|L | Cyclic RNA (R(P*AP*AP*A) | synthetic construct | Structure of Acinetobacter baumannii Cap4 SAVED/CARF-domain containing receptor with the cyclic trinucleotide 3'3'3'-cAAA | X-ray diffraction | 2.4 | 2020-06-17 | |||
| 15 | 6WAN|1|I | Cyclic RNA (R(P*AP*AP*A) | synthetic construct | Structure of Acinetobacter baumannii Cap4 SAVED/CARF-domain containing receptor with the cyclic trinucleotide 3'3'3'-cAAA | X-ray diffraction | 2.4 | 2020-06-17 | |||
| 16 | 6YWO|1|F | RNA (5'-R(*AP*AP*A)-3') | synthetic construct | CutA in complex with A3 RNA | X-ray diffraction | 1.9 | 2020-08-05 | |||
| 17 | 6WAN|1|J | Cyclic RNA (R(P*AP*AP*A) | synthetic construct | Structure of Acinetobacter baumannii Cap4 SAVED/CARF-domain containing receptor with the cyclic trinucleotide 3'3'3'-cAAA | X-ray diffraction | 2.4 | 2020-06-17 | |||
| 18 | 6YWO|1|E | RNA (5'-R(*AP*AP*A)-3') | synthetic construct | CutA in complex with A3 RNA | X-ray diffraction | 1.9 | 2020-08-05 | |||
| 19 | 6YWO|1|K | RNA (5'-R(*AP*AP*A)-3') | synthetic construct | CutA in complex with A3 RNA | X-ray diffraction | 1.9 | 2020-08-05 | |||
| 20 | 6VM6|1|I | 2'-5'-Linked Cyclic RNA (5'-R(P*AP*AP*A)-3') | synthetic construct | Structure of Acinetobacter baumannii Cap4 SAVED/CARF-domain containing receptor with the cyclic trinucleotide 2'3'3'-cAAA | X-ray diffraction | 2.1 | 2020-06-17 | |||
| 21 | 6VM6|1|H | 2'-5'-Linked Cyclic RNA (5'-R(P*AP*AP*A)-3') | synthetic construct | Structure of Acinetobacter baumannii Cap4 SAVED/CARF-domain containing receptor with the cyclic trinucleotide 2'3'3'-cAAA | X-ray diffraction | 2.1 | 2020-06-17 | |||
| 22 | 6YWO|1|I | RNA (5'-R(*AP*AP*A)-3') | synthetic construct | CutA in complex with A3 RNA | X-ray diffraction | 1.9 | 2020-08-05 | |||
| 23 | 3GPQ|1|E | RNA (5'-R(*AP*AP*A)-3') | Crystal structure of macro domain of Chikungunya virus in complex with RNA | X-ray diffraction | 2 | 2009-07-21 | ||||
| 24 | 3GPQ|1|F | RNA (5'-R(*AP*AP*A)-3') | Crystal structure of macro domain of Chikungunya virus in complex with RNA | X-ray diffraction | 2 | 2009-07-21 | ||||
| 25 | 6VM6|1|K | 2'-5'-Linked Cyclic RNA (5'-R(P*AP*AP*A)-3') | synthetic construct | Structure of Acinetobacter baumannii Cap4 SAVED/CARF-domain containing receptor with the cyclic trinucleotide 2'3'3'-cAAA | X-ray diffraction | 2.1 | 2020-06-17 |
Release history
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|---|---|---|---|---|
| NR_2.5_65223.6 | NR_2.5_65223.5 | 3.242 | (22) 6YWO|1|F, 6VM6|1|H, 6YWO|1|E, 6VM6|1|G, 6WAN|1|L, 6Q1H|1|H, 6WAN|1|K, 6Q1H|1|D, 6WAN|1|J, 6P7P|1|F, 6WAN|1|I, 6P7P|1|E, 6WAN|1|H, 6P7P|1|D, 6WAN|1|G, 3GPQ|1|F, 6VM6|1|K, 3GPQ|1|E, 6YWO|1|K, 6VM6|1|J, 6YWO|1|I, 6VM6|1|I | (3) 7SOR|1|B, 7SOR|1|D, 7SOQ|1|B | (0) |
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|---|---|---|---|---|
| NR_2.5_65223.6 | NR_2.5_65223.7 | 3.254 | (25) 6WAN|1|I, 6WAN|1|H, 6WAN|1|G, 6VM6|1|K, 6VM6|1|J, 6VM6|1|I, 6VM6|1|H, 7SOR|1|D, 6VM6|1|G, 7SOR|1|B, 6Q1H|1|H, 7SOQ|1|B, 6Q1H|1|D, 6YWO|1|K, 6P7P|1|F, 6YWO|1|I, 6P7P|1|E, 6YWO|1|F, 6P7P|1|D, 6YWO|1|E, 3GPQ|1|F, 6WAN|1|L, 3GPQ|1|E, 6WAN|1|K, 6WAN|1|J | (0) | (1) 7ZGV|1|D |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|
| 1 | 7SOR|1|D | LaM domain of human LARP1 in complex with AAA RNA | X-RAY DIFFRACTION | 1.35 | 3 |
| 2 | 7SOR|1|B | LaM domain of human LARP1 in complex with AAA RNA | X-RAY DIFFRACTION | 1.35 | 3 |
| 3 | 7SOQ|1|B | LaM domain of human LARP1 in complex with AAA RNA | X-RAY DIFFRACTION | 1.15 | 3 |
| 4 | 6WAN|1|L | Structure of Acinetobacter baumannii Cap4 SAVED/CARF-domain containing receptor with the cyclic trinucleotide 3'3'3'-cAAA | X-RAY DIFFRACTION | 2.4 | 3 |
| 5 | 6WAN|1|H | Structure of Acinetobacter baumannii Cap4 SAVED/CARF-domain containing receptor with the cyclic trinucleotide 3'3'3'-cAAA | X-RAY DIFFRACTION | 2.4 | 3 |
| 6 | 6WAN|1|I | Structure of Acinetobacter baumannii Cap4 SAVED/CARF-domain containing receptor with the cyclic trinucleotide 3'3'3'-cAAA | X-RAY DIFFRACTION | 2.4 | 3 |
| 7 | 6WAN|1|J | Structure of Acinetobacter baumannii Cap4 SAVED/CARF-domain containing receptor with the cyclic trinucleotide 3'3'3'-cAAA | X-RAY DIFFRACTION | 2.4 | 3 |
| 8 | 6WAN|1|K | Structure of Acinetobacter baumannii Cap4 SAVED/CARF-domain containing receptor with the cyclic trinucleotide 3'3'3'-cAAA | X-RAY DIFFRACTION | 2.4 | 3 |
| 9 | 6P7P|1|E | Structure of E. coli MS115-1 NucC, cAAA-bound form | X-RAY DIFFRACTION | 1.66 | 3 |
| 10 | 6P7P|1|F | Structure of E. coli MS115-1 NucC, cAAA-bound form | X-RAY DIFFRACTION | 1.66 | 3 |
| 11 | 6P7P|1|D | Structure of E. coli MS115-1 NucC, cAAA-bound form | X-RAY DIFFRACTION | 1.66 | 3 |
| 12 | 6Q1H|1|H | Structure of P. aeruginosa ATCC27853 NucC, cAAA-bound form | X-RAY DIFFRACTION | 1.45 | 3 |
| 13 | 6Q1H|1|D | Structure of P. aeruginosa ATCC27853 NucC, cAAA-bound form | X-RAY DIFFRACTION | 1.45 | 3 |
| 14 | 6VM6|1|H | Structure of Acinetobacter baumannii Cap4 SAVED/CARF-domain containing receptor with the cyclic trinucleotide 2'3'3'-cAAA | X-RAY DIFFRACTION | 2.1 | 3 |
| 15 | 6VM6|1|K | Structure of Acinetobacter baumannii Cap4 SAVED/CARF-domain containing receptor with the cyclic trinucleotide 2'3'3'-cAAA | X-RAY DIFFRACTION | 2.1 | 3 |
| 16 | 6VM6|1|G | Structure of Acinetobacter baumannii Cap4 SAVED/CARF-domain containing receptor with the cyclic trinucleotide 2'3'3'-cAAA | X-RAY DIFFRACTION | 2.1 | 3 |
| 17 | 6VM6|1|I | Structure of Acinetobacter baumannii Cap4 SAVED/CARF-domain containing receptor with the cyclic trinucleotide 2'3'3'-cAAA | X-RAY DIFFRACTION | 2.1 | 3 |
| 18 | 6VM6|1|J | Structure of Acinetobacter baumannii Cap4 SAVED/CARF-domain containing receptor with the cyclic trinucleotide 2'3'3'-cAAA | X-RAY DIFFRACTION | 2.1 | 3 |
| 19 | 6WAN|1|G | Structure of Acinetobacter baumannii Cap4 SAVED/CARF-domain containing receptor with the cyclic trinucleotide 3'3'3'-cAAA | X-RAY DIFFRACTION | 2.4 | 3 |
| 20 | 6YWO|1|E | CutA in complex with A3 RNA | X-RAY DIFFRACTION | 1.9 | 3 |
| 21 | 6YWO|1|I | CutA in complex with A3 RNA | X-RAY DIFFRACTION | 1.9 | 3 |
| 22 | 6YWO|1|F | CutA in complex with A3 RNA | X-RAY DIFFRACTION | 1.9 | 3 |
| 23 | 6YWO|1|K | CutA in complex with A3 RNA | X-RAY DIFFRACTION | 1.9 | 3 |
| 24 | 3GPQ|1|E | Crystal structure of macro domain of Chikungunya virus in complex with RNA | X-RAY DIFFRACTION | 2 | 2 |
| 25 | 3GPQ|1|F | Crystal structure of macro domain of Chikungunya virus in complex with RNA | X-RAY DIFFRACTION | 2 | 2 |