NR_2.5_73827.4

Members (16)
History
Heat map

#	IFE	Molecule	Organism	Source	Title	Method	Res. Å	Date
1	4NLF\|1\|A (rep)	23S ribosomal RNA Sarcin Ricin Loop			2'-trifluoromethylthio-2'-deoxycytidine-modified SRL	X-ray diffraction	1	2014-11-19
2	480D\|1\|A	SARCIN/RICIN DOMAIN FROM 23 S RRNA			CRYSTAL STRUCTURE OF THE SARCIN/RICIN DOMAIN FROM E. COLI 23 S RRNA	X-ray diffraction	1.5	1999-10-08
3	4Y27\|1\|A	27-mer 23S Sarcin-Ricil Loop	Escherichia coli	Bacteria	E.coli 23S Sarcin-Ricil Loop, modified with a 2-Me on G2661 and a methylphosphonate on A2662	X-ray diffraction	1	2015-11-18
4	3DW4\|1\|A	Sarcin/Ricin Domain from E. Coli 23 S rRNA			Crystal Structure of the Sarcin/Ricin Domain from E. COLI 23 S rRNA, U2650-OCH3 modified	X-ray diffraction	0.97	2009-03-24
5	1MSY\|1\|A	SARCIN/RICIN DOMAIN FROM 23 S RRNA			GUAA tetraloop mutant of Sarcin/Ricin domain from E. Coli 23 S rRNA	X-ray diffraction	1.41	2003-02-25
6	3DW6\|1\|A	Sarcin/Ricin Domain from E. Coli 23 S rRNA			Crystal Structure of the Sarcin/Ricin Domain from E. COLI 23 S rRNA, U2650-SECH3 modified	X-ray diffraction	1	2009-03-24
7	5D99\|1\|A	RNA (27-MER) hairpin from sarcin-ricin domain of E. coli 23S rRNA	Enterobacteria phage L1	Viruses	3DW4 redetermined by direct methods starting from random phase angles	X-ray diffraction	0.97	2016-04-13
8	3DVZ\|1\|A	Sarcin/Ricin Domain from E. Coli 23 S rRNA			Crystal Structure of the Sarcin/Ricin Domain from E. coli 23 S rRNA	X-ray diffraction	1	2009-03-24
9	3S7C\|1\|A	Ecoli 23 S rRNA Sarcin Ricin loop			Crystal structure of a 2'-azido-uridine-modified RNA	X-ray diffraction	1.1	2012-04-11
10	4NXH\|1\|A	23S ribosomal RNA Sarcin Ricin Loop	Escherichia coli	Bacteria	2'-Trifluoromethylthiouridine-modified E. coli 23S rRNA Sarcin Ricin Loop	X-ray diffraction	1.16	2014-12-10
11	3S8U\|1\|A	Ecoli 23 S rRNA Sarcin Ricin loop	Escherichia coli	Bacteria	Crystal structure of a 2-azido-adenine-modified RNA	X-ray diffraction	1.2	2012-04-11
12	1Q9A\|1\|A	Sarcin/ricin 23S rRNA			Crystal structure of the sarcin/ricin domain from E.coli 23S rRNA at 1.04 resolution	X-ray diffraction	1.04	2003-11-25
13	483D\|1\|A	SARCIN/RICIN RRNA DOMAIN			CRYSTAL STRUCTURE OF THE SARCIN/RICIN DOMAIN FROM E. COLI 23 S RRNA	X-ray diffraction	1.11	1999-10-08
14	3DW5\|1\|A	Sarcin/Ricin Domain from E. Coli 23 S rRNA			Crystal Structure of the Sarcin/Ricin Domain from E. COLI 23S rRNA, U2656-OCH3 modified	X-ray diffraction	0.96	2009-03-24
15	4NMG\|1\|A	23S ribosomal RNA Sarcin Ricin Loop			2'-Trifluoromethylthio-2'-deoxyuridine-modified SRL	X-ray diffraction	1.01	2014-11-19
16	3DW7\|1\|A	Sarcin/Ricin Domain from E. Coli 23 S rRNA			Crystal Structure of the Sarcin/Ricin Domain from E. COLI 23 S rRNA, U2656-SeCH3 modified	X-ray diffraction	1	2009-03-24

Release history

Release	2.71	2.72	2.73	2.74	2.75	2.76	2.77	2.78	2.79	2.80	2.81	2.82	2.83	2.84	2.85	2.86	2.87	2.88	2.89	2.90	2.91	2.92
Date	2016-04-15	2016-04-22	2016-04-29	2016-05-06	2016-05-13	2016-05-20	2016-05-27	2016-06-03	2016-06-10	2016-06-17	2016-06-24	2016-07-01	2016-07-08	2016-07-15	2016-07-22	2016-07-29	2016-08-05	2016-08-12	2016-08-19	2016-08-26	2016-09-02	2016-09-09

Parents

This class	Parent classes	Release id	Intersection	Added to this class	Only in parent
NR_2.5_73827.4	NR_all_73827.3	2.71	(15) 4NMG\|1\|A, 4NLF\|1\|A, 483D\|1\|A, 480D\|1\|A, 3S8U\|1\|A, 3S7C\|1\|A, 3DW7\|1\|A, 3DW6\|1\|A, 3DW5\|1\|A, 3DW4\|1\|A, 3DVZ\|1\|A, 1Q9A\|1\|A, 1MSY\|1\|A, 4Y27\|1\|A, 4NXH\|1\|A	(1) 5D99\|1\|A	(0)

Children

This class	Descendant classes	Release id	Intersection	Only in this class	Added to child
NR_2.5_73827.4	NR_2.5_94729.1	2.93	(16) 1MSY\|1\|A, 3DW6\|1\|A, 4NLF\|1\|A, 483D\|1\|A, 5D99\|1\|A, 3DW5\|1\|A, 480D\|1\|A, 4Y27\|1\|A, 3DW4\|1\|A, 3S8U\|1\|A, 4NXH\|1\|A, 3DVZ\|1\|A, 3S7C\|1\|A, 4NMG\|1\|A, 1Q9A\|1\|A, 3DW7\|1\|A	(0)	(3) 1JBS\|1\|C, 1JBS\|1\|D, 1JBR\|1\|D

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).

#S	PDB	Title	Method	Resolution	Length
1	4NLF\|1\|A	2'-trifluoromethylthio-2'-deoxycytidine-modified SRL	X-RAY DIFFRACTION	1	28
2	480D\|1\|A	CRYSTAL STRUCTURE OF THE SARCIN/RICIN DOMAIN FROM E. COLI 23 S RRNA	X-RAY DIFFRACTION	1.5	27
3	4Y27\|1\|A	E.coli 23S Sarcin-Ricil Loop, modified with a 2-Me on G2661 and a methylphosphonate on A2662	X-RAY DIFFRACTION	1	25
4	3DW4\|1\|A	Crystal Structure of the Sarcin/Ricin Domain from E. COLI 23 S rRNA, U2650-OCH3 modified	X-RAY DIFFRACTION	0.97	26
5	5D99\|1\|A	3DW4 redetermined by direct methods starting from random phase angles	X-RAY DIFFRACTION	0.97	30
6	3DW6\|1\|A	Crystal Structure of the Sarcin/Ricin Domain from E. COLI 23 S rRNA, U2650-SECH3 modified	X-RAY DIFFRACTION	1	28
7	3S7C\|1\|A	Crystal structure of a 2'-azido-uridine-modified RNA	X-RAY DIFFRACTION	1.1	32
8	4NXH\|1\|A	2'-Trifluoromethylthiouridine-modified E. coli 23S rRNA Sarcin Ricin Loop	X-RAY DIFFRACTION	1.16	32
9	3DW7\|1\|A	Crystal Structure of the Sarcin/Ricin Domain from E. COLI 23 S rRNA, U2656-SeCH3 modified	X-RAY DIFFRACTION	1	37
10	4NMG\|1\|A	2'-Trifluoromethylthio-2'-deoxyuridine-modified SRL	X-RAY DIFFRACTION	1.01	36
11	3DW5\|1\|A	Crystal Structure of the Sarcin/Ricin Domain from E. COLI 23S rRNA, U2656-OCH3 modified	X-RAY DIFFRACTION	0.96	32
12	3DVZ\|1\|A	Crystal Structure of the Sarcin/Ricin Domain from E. coli 23 S rRNA	X-RAY DIFFRACTION	1	35
13	3S8U\|1\|A	Crystal structure of a 2-azido-adenine-modified RNA	X-RAY DIFFRACTION	1.2	34
14	1Q9A\|1\|A	Crystal structure of the sarcin/ricin domain from E.coli 23S rRNA at 1.04 resolution	X-RAY DIFFRACTION	1.04	38
15	483D\|1\|A	CRYSTAL STRUCTURE OF THE SARCIN/RICIN DOMAIN FROM E. COLI 23 S RRNA	X-RAY DIFFRACTION	1.11	39
16	1MSY\|1\|A	GUAA tetraloop mutant of Sarcin/Ricin domain from E. Coli 23 S rRNA	X-RAY DIFFRACTION	1.41	31

Equivalence class NR_2.5_73827.4 Obsolete

Release history

Parents

Children