Equivalence class NR_2.5_79924.1 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 4OQ9|1|s (rep) | RNA (5'-R(P*UP*UP*UP*UP*UP*UP*UP*UP*UP*U)-3') | Tobacco virtovirus 1 | Satellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraints | X-ray diffraction | 1.45 | 2014-09-10 | |||
| 2 | 3I62|1|B | 5'-R(*UP*UP*UP*UP*UP*UP*UP*UP*UP*U)-3' | Structure of Mss116p bound to ssRNA and ADP-Aluminum Fluoride | X-ray diffraction | 1.95 | 2009-09-08 | ||||
| 3 | 3I61|1|B | 5'-R(*UP*UP*UP*UP*UP*UP*UP*UP*UP*U)-3' | Structure of Mss116p bound to ssRNA and ADP-Beryllium Fluoride | X-ray diffraction | 2.1 | 2009-09-08 | ||||
| 4 | 3I5X|1|B | 5'-R(*UP*UP*UP*UP*UP*UP*UP*UP*UP*U)-3' | Structure of Mss116p bound to ssRNA and AMP-PNP | X-ray diffraction | 1.9 | 2009-09-08 | ||||
| 5 | 4OQ9|1|f | RNA (5'-R(P*UP*UP*UP*UP*UP*UP*UP*UP*UP*U)-3') | Tobacco virtovirus 1 | Satellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraints | X-ray diffraction | 1.45 | 2014-09-10 | |||
| 6 | 4NIA|1|f | RNA (5'-R(P*UP*UP*UP*UP*UP*UP*UP*UP*UP*U)-3') | Tobacco virtovirus 1 | Satellite Tobacco Mosaic Virus Refined at room temperature to 1.8 A Resolution using NCS Restraints | X-ray diffraction | 1.82 | 2014-09-10 | |||
| 7 | 4OQ9|1|j | RNA (5'-R(P*UP*UP*UP*UP*UP*UP*UP*UP*UP*U)-3') | Tobacco virtovirus 1 | Satellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraints | X-ray diffraction | 1.45 | 2014-09-10 | |||
| 8 | 4NIA|1|j | RNA (5'-R(P*UP*UP*UP*UP*UP*UP*UP*UP*UP*U)-3') | Tobacco virtovirus 1 | Satellite Tobacco Mosaic Virus Refined at room temperature to 1.8 A Resolution using NCS Restraints | X-ray diffraction | 1.82 | 2014-09-10 | |||
| 9 | 4OQ9|1|k | RNA (5'-R(P*UP*UP*UP*UP*UP*UP*UP*UP*UP*U)-3') | Tobacco virtovirus 1 | Satellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraints | X-ray diffraction | 1.45 | 2014-09-10 | |||
| 10 | 4NIA|1|k | RNA (5'-R(P*UP*UP*UP*UP*UP*UP*UP*UP*UP*U)-3') | Tobacco virtovirus 1 | Satellite Tobacco Mosaic Virus Refined at room temperature to 1.8 A Resolution using NCS Restraints | X-ray diffraction | 1.82 | 2014-09-10 | |||
| 11 | 4OQ9|1|l | RNA (5'-R(P*UP*UP*UP*UP*UP*UP*UP*UP*UP*U)-3') | Tobacco virtovirus 1 | Satellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraints | X-ray diffraction | 1.45 | 2014-09-10 | |||
| 12 | 4NIA|1|l | RNA (5'-R(P*UP*UP*UP*UP*UP*UP*UP*UP*UP*U)-3') | Tobacco virtovirus 1 | Satellite Tobacco Mosaic Virus Refined at room temperature to 1.8 A Resolution using NCS Restraints | X-ray diffraction | 1.82 | 2014-09-10 | |||
| 13 | 4OQ9|1|o | RNA (5'-R(P*UP*UP*UP*UP*UP*UP*UP*UP*UP*U)-3') | Tobacco virtovirus 1 | Satellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraints | X-ray diffraction | 1.45 | 2014-09-10 | |||
| 14 | 4NIA|1|o | RNA (5'-R(P*UP*UP*UP*UP*UP*UP*UP*UP*UP*U)-3') | Tobacco virtovirus 1 | Satellite Tobacco Mosaic Virus Refined at room temperature to 1.8 A Resolution using NCS Restraints | X-ray diffraction | 1.82 | 2014-09-10 | |||
| 15 | 4NIA|1|p | RNA (5'-R(P*UP*UP*UP*UP*UP*UP*UP*UP*UP*U)-3') | Tobacco virtovirus 1 | Satellite Tobacco Mosaic Virus Refined at room temperature to 1.8 A Resolution using NCS Restraints | X-ray diffraction | 1.82 | 2014-09-10 | |||
| 16 | 4OQ9|1|p | RNA (5'-R(P*UP*UP*UP*UP*UP*UP*UP*UP*UP*U)-3') | Tobacco virtovirus 1 | Satellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraints | X-ray diffraction | 1.45 | 2014-09-10 | |||
| 17 | 4OQ9|1|q | RNA (5'-R(P*UP*UP*UP*UP*UP*UP*UP*UP*UP*U)-3') | Tobacco virtovirus 1 | Satellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraints | X-ray diffraction | 1.45 | 2014-09-10 | |||
| 18 | 4NIA|1|q | RNA (5'-R(P*UP*UP*UP*UP*UP*UP*UP*UP*UP*U)-3') | Tobacco virtovirus 1 | Satellite Tobacco Mosaic Virus Refined at room temperature to 1.8 A Resolution using NCS Restraints | X-ray diffraction | 1.82 | 2014-09-10 | |||
| 19 | 4OQ9|1|r | RNA (5'-R(P*UP*UP*UP*UP*UP*UP*UP*UP*UP*U)-3') | Tobacco virtovirus 1 | Satellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraints | X-ray diffraction | 1.45 | 2014-09-10 | |||
| 20 | 4NIA|1|r | RNA (5'-R(P*UP*UP*UP*UP*UP*UP*UP*UP*UP*U)-3') | Tobacco virtovirus 1 | Satellite Tobacco Mosaic Virus Refined at room temperature to 1.8 A Resolution using NCS Restraints | X-ray diffraction | 1.82 | 2014-09-10 | |||
| 21 | 4NIA|1|s | RNA (5'-R(P*UP*UP*UP*UP*UP*UP*UP*UP*UP*U)-3') | Tobacco virtovirus 1 | Satellite Tobacco Mosaic Virus Refined at room temperature to 1.8 A Resolution using NCS Restraints | X-ray diffraction | 1.82 | 2014-09-10 | |||
| 22 | 3I5Y|1|B | 5'-R(*UP*UP*UP*(5BU)P*UP*UP*UP*UP*UP*U)-3' | Structure of Mss116p bound to ssRNA containing a single 5-BrU and AMP-PNP | X-ray diffraction | 2.49 | 2009-09-08 | ||||
| 23 | 3SQX|1|B | RNA (5'-R(*UP*UP*UP*UP*UP*UP*UP*UP*UP*U)-3') | Structure of Mss116p (NTE and C-tail double deletion) bound to ssRNA and AMP-PNP | X-ray diffraction | 2.11 | 2011-10-12 | ||||
| 24 | 3SQW|1|B | RNA (5'-R(P*UP*UP*UP*UP*UP*UP*UP*UP*UP*U)-3') | Structure of Mss116p (NTE deletion) bound to ssRNA and AMP-PNP | X-ray diffraction | 1.91 | 2011-10-12 | ||||
| 25 | 2DB3|1|E | 5'-R(*UP*UP*UP*UP*UP*UP*UP*UP*UP*U)-3' | Structural basis for RNA unwinding by the DEAD-box protein Drosophila Vasa | X-ray diffraction | 2.2 | 2006-05-02 | ||||
| 26 | 2DB3|1|F | 5'-R(*UP*UP*UP*UP*UP*UP*UP*UP*UP*U)-3' | Structural basis for RNA unwinding by the DEAD-box protein Drosophila Vasa | X-ray diffraction | 2.2 | 2006-05-02 | ||||
| 27 | 2DB3|1|G | 5'-R(*UP*UP*UP*UP*UP*UP*UP*UP*UP*U)-3' | Structural basis for RNA unwinding by the DEAD-box protein Drosophila Vasa | X-ray diffraction | 2.2 | 2006-05-02 | ||||
| 28 | 3FHT|1|C | RNA (5'-R(*UP*UP*UP*UP*UP*UP*UP*UP*UP*U)-3') | Crystal structure of human Dbp5 in complex with AMPPNP and RNA | X-ray diffraction | 2.2 | 2009-02-17 | ||||
| 29 | 3FHT|1|D | RNA (5'-R(*UP*UP*UP*UP*UP*UP*UP*UP*UP*U)-3') | Crystal structure of human Dbp5 in complex with AMPPNP and RNA | X-ray diffraction | 2.2 | 2009-02-17 | ||||
| 30 | 2DB3|1|H | 5'-R(*UP*UP*UP*UP*UP*UP*UP*UP*UP*U)-3' | Structural basis for RNA unwinding by the DEAD-box protein Drosophila Vasa | X-ray diffraction | 2.2 | 2006-05-02 |
Release history
| Release | 2.0 | 2.1 | 2.2 | 2.3 | 2.4 | 2.5 | 2.6 | 2.7 | 2.8 | 2.9 | 2.10 | 2.11 | 2.12 | 2.13 | 2.14 | 2.15 | 2.16 | 2.17 | 2.18 | 2.19 | 2.20 | 2.21 | 2.22 | 2.23 | 2.24 | 2.25 | 2.26 | 2.27 | 2.28 | 2.29 | 2.30 | 2.31 | 2.32 | 2.33 | 2.34 | 2.35 | 2.36 | 2.37 | 2.38 | 2.39 | 2.40 | 2.41 | 2.42 | 2.43 | 2.44 | 2.45 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2014-12-05 | 2014-12-12 | 2014-12-19 | 2014-12-26 | 2015-01-02 | 2015-01-09 | 2015-01-16 | 2015-01-23 | 2015-01-30 | 2015-02-06 | 2015-02-13 | 2015-02-20 | 2015-02-27 | 2015-03-06 | 2015-03-13 | 2015-03-20 | 2015-03-27 | 2015-04-03 | 2015-04-10 | 2015-04-17 | 2015-04-24 | 2015-05-01 | 2015-05-08 | 2015-05-15 | 2015-05-22 | 2015-05-29 | 2015-06-05 | 2015-06-12 | 2015-06-19 | 2015-06-26 | 2015-07-03 | 2015-07-10 | 2015-07-17 | 2015-07-24 | 2015-07-31 | 2015-08-07 | 2015-08-14 | 2015-08-21 | 2015-08-28 | 2015-09-04 | 2015-09-11 | 2015-09-18 | 2015-09-25 | 2015-10-02 | 2015-10-09 | 2015-10-16 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|
| 1 | 3I5Y|1|B | Structure of Mss116p bound to ssRNA containing a single 5-BrU and AMP-PNP | X-RAY DIFFRACTION | 2.49 | 9 |
| 2 | 3I62|1|B | Structure of Mss116p bound to ssRNA and ADP-Aluminum Fluoride | X-RAY DIFFRACTION | 1.95 | 10 |
| 3 | 3I5X|1|B | Structure of Mss116p bound to ssRNA and AMP-PNP | X-RAY DIFFRACTION | 1.9 | 10 |
| 4 | 3I61|1|B | Structure of Mss116p bound to ssRNA and ADP-Beryllium Fluoride | X-RAY DIFFRACTION | 2.1 | 10 |
| 5 | 4OQ9|1|p | Satellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraints | X-RAY DIFFRACTION | 1.45 | 10 |
| 6 | 4OQ9|1|k | Satellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraints | X-RAY DIFFRACTION | 1.45 | 10 |
| 7 | 4OQ9|1|f | Satellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraints | X-RAY DIFFRACTION | 1.45 | 10 |
| 8 | 4OQ9|1|j | Satellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraints | X-RAY DIFFRACTION | 1.45 | 10 |
| 9 | 4OQ9|1|l | Satellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraints | X-RAY DIFFRACTION | 1.45 | 10 |
| 10 | 4OQ9|1|o | Satellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraints | X-RAY DIFFRACTION | 1.45 | 10 |
| 11 | 4OQ9|1|r | Satellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraints | X-RAY DIFFRACTION | 1.45 | 10 |
| 12 | 4OQ9|1|q | Satellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraints | X-RAY DIFFRACTION | 1.45 | 10 |
| 13 | 4OQ9|1|s | Satellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraints | X-RAY DIFFRACTION | 1.45 | 10 |
| 14 | 4NIA|1|p | Satellite Tobacco Mosaic Virus Refined at room temperature to 1.8 A Resolution using NCS Restraints | X-RAY DIFFRACTION | 1.82 | 10 |
| 15 | 4NIA|1|k | Satellite Tobacco Mosaic Virus Refined at room temperature to 1.8 A Resolution using NCS Restraints | X-RAY DIFFRACTION | 1.82 | 10 |
| 16 | 4NIA|1|j | Satellite Tobacco Mosaic Virus Refined at room temperature to 1.8 A Resolution using NCS Restraints | X-RAY DIFFRACTION | 1.82 | 10 |
| 17 | 4NIA|1|f | Satellite Tobacco Mosaic Virus Refined at room temperature to 1.8 A Resolution using NCS Restraints | X-RAY DIFFRACTION | 1.82 | 10 |
| 18 | 4NIA|1|l | Satellite Tobacco Mosaic Virus Refined at room temperature to 1.8 A Resolution using NCS Restraints | X-RAY DIFFRACTION | 1.82 | 10 |
| 19 | 4NIA|1|r | Satellite Tobacco Mosaic Virus Refined at room temperature to 1.8 A Resolution using NCS Restraints | X-RAY DIFFRACTION | 1.82 | 10 |
| 20 | 4NIA|1|s | Satellite Tobacco Mosaic Virus Refined at room temperature to 1.8 A Resolution using NCS Restraints | X-RAY DIFFRACTION | 1.82 | 10 |
| 21 | 4NIA|1|o | Satellite Tobacco Mosaic Virus Refined at room temperature to 1.8 A Resolution using NCS Restraints | X-RAY DIFFRACTION | 1.82 | 10 |
| 22 | 4NIA|1|q | Satellite Tobacco Mosaic Virus Refined at room temperature to 1.8 A Resolution using NCS Restraints | X-RAY DIFFRACTION | 1.82 | 10 |
| 23 | 3SQX|1|B | Structure of Mss116p (NTE and C-tail double deletion) bound to ssRNA and AMP-PNP | X-RAY DIFFRACTION | 2.11 | 8 |
| 24 | 3SQW|1|B | Structure of Mss116p (NTE deletion) bound to ssRNA and AMP-PNP | X-RAY DIFFRACTION | 1.91 | 8 |
| 25 | 2DB3|1|F | Structural basis for RNA unwinding by the DEAD-box protein Drosophila Vasa | X-RAY DIFFRACTION | 2.2 | 7 |
| 26 | 2DB3|1|G | Structural basis for RNA unwinding by the DEAD-box protein Drosophila Vasa | X-RAY DIFFRACTION | 2.2 | 7 |
| 27 | 2DB3|1|E | Structural basis for RNA unwinding by the DEAD-box protein Drosophila Vasa | X-RAY DIFFRACTION | 2.2 | 7 |
| 28 | 2DB3|1|H | Structural basis for RNA unwinding by the DEAD-box protein Drosophila Vasa | X-RAY DIFFRACTION | 2.2 | 6 |
| 29 | 3FHT|1|D | Crystal structure of human Dbp5 in complex with AMPPNP and RNA | X-RAY DIFFRACTION | 2.2 | 6 |
| 30 | 3FHT|1|C | Crystal structure of human Dbp5 in complex with AMPPNP and RNA | X-RAY DIFFRACTION | 2.2 | 6 |
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