NR_2.5_83717.100

Members (20)
History
Heat map

#	IFE	Standardized name	Molecule	Organism	Source	Rfam	Title	Method	Res. Å	Date
1	4YBB\|1\|DA (rep)	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	High-resolution structure of the Escherichia coli ribosome	X-ray diffraction	2.1	2015-03-18
2	4YBB\|1\|CA	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	High-resolution structure of the Escherichia coli ribosome	X-ray diffraction	2.1	2015-03-18
3	7ZP8\|1\|b	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	70S E. coli ribosome with a stalled filamin domain 5 nascent chain	Electron microscopy	2.2	2022-08-10
4	7K00\|1\|a	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	Structure of the Bacterial Ribosome at 2 Angstrom Resolution	Electron microscopy	1.98	2020-09-23
5	6XZ7\|1\|A	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	E. coli 50S ribosomal subunit in complex with dirithromycin, fMet-Phe-tRNA(Phe) and deacylated tRNA(iMet).	Electron microscopy	2.1	2020-07-22
6	7Z20\|1\|b	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	70S E. coli ribosome with an extended uL23 loop from Candidatus marinimicrobia and a stalled filamin domain 5 nascent chain	Electron microscopy	2.29	2022-08-10
7	7LVK\|1\|I	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	Cfr-modified 50S subunit from Escherichia coli	Electron microscopy	2.2	2021-12-15
8	6PJ6\|1\|I	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	High resolution cryo-EM structure of E.coli 50S	Electron microscopy	2.2	2020-01-22
9	7N1P\|1\|23	Large subunit ribosomal RNA	23S rRNA	Escherichia coli K-12	Bacteria	RF02541	Elongating 70S ribosome complex in a classical pre-translocation (PRE-C) conformation	Electron microscopy	2.33	2021-07-14
10	7PJS\|1\|A	Large subunit ribosomal RNA	23S ribosomal RNA	Escherichia coli	Bacteria	RF02541	Structure of the 70S ribosome with tRNAs in the classical pre-translocation state and apramycin (C)	Electron microscopy	2.35	2021-10-20
11	7S1H\|1\|I	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	Wild-type Escherichia coli ribosome with antibiotic linezolid	Electron microscopy	2.35	2021-11-17
12	7S1K\|1\|I	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	Cfr-modified Escherichia coli stalled ribosome with antibiotic radezolid	Electron microscopy	2.42	2022-01-19
13	7O1A\|1\|BA	Large subunit ribosomal RNA	Ribosomal RNA 23S	Escherichia coli K-12	Bacteria	RF02541	Cryo-EM structure of an Escherichia coli TnaC(R23F)-ribosome complex stalled in response to L-tryptophan	Electron microscopy	2.4	2021-09-01
14	7S1J\|1\|I	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	Wild-type Escherichia coli ribosome with antibiotic radezolid	Electron microscopy	2.47	2022-03-02
15	7S1I\|1\|I	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	Wild-type Escherichia coli stalled ribosome with antibiotic radezolid	Electron microscopy	2.48	2022-03-02
16	7S1G\|1\|I	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	wild-type Escherichia coli stalled ribosome with antibiotic linezolid	Electron microscopy	2.48	2021-11-17
17	7BL4\|1\|A	Large subunit ribosomal RNA	23S ribosomal RNA	Escherichia coli K-12	Bacteria	RF02541	in vitro reconstituted 50S-ObgE-GMPPNP-RsfS particle	Electron microscopy	2.4	2021-05-12
18	6PCR\|1\|I	Large subunit ribosomal RNA	23S ribosomal RNA	Escherichia coli	Bacteria	RF02541	E. coli 50S ribosome bound to compound 40o	Electron microscopy	2.5	2020-06-17
19	6PC6\|1\|I	Large subunit ribosomal RNA	23S ribosomal RNA	Escherichia coli	Bacteria	RF02541	E. coli 50S ribosome bound to compound 47	Electron microscopy	2.5	2020-06-17
20	6PC7\|1\|I	Large subunit ribosomal RNA	23S ribosomal RNA	Escherichia coli	Bacteria	RF02541	E. coli 50S ribosome bound to compound 46	Electron microscopy	2.5	2020-06-17

Release history

Release	3.244	3.245	3.246	3.247	3.248	3.249	3.250	3.251	3.252
Date	2022-08-17	2022-08-24	2022-08-31	2022-09-07	2022-09-14	2022-09-21	2022-09-28	2022-10-05	2022-10-12

Parents

This class	Parent classes	Release id	Intersection	Added to this class	Only in parent
NR_2.5_83717.100	NR_2.5_83717.99	3.244	(20) 4YBB\|1\|CA, 7O1A\|1\|BA, 7PJS\|1\|A, 7S1G\|1\|I, 7S1H\|1\|I, 7S1I\|1\|I, 7S1J\|1\|I, 7S1K\|1\|I, 7Z20\|1\|b, 7N1P\|1\|23, 7LVK\|1\|I, 4YBB\|1\|DA, 6PC6\|1\|I, 6PC7\|1\|I, 6PCR\|1\|I, 6PJ6\|1\|I, 6XZ7\|1\|A, 7BL4\|1\|A, 7K00\|1\|a, 7ZP8\|1\|b	(0)	(0)

Children

This class	Descendant classes	Release id	Intersection	Only in this class	Added to child
NR_2.5_83717.100	NR_2.5_83717.101	3.253	(20) 4YBB\|1\|CA, 7O1A\|1\|BA, 7PJS\|1\|A, 7S1G\|1\|I, 7S1H\|1\|I, 7S1I\|1\|I, 7S1J\|1\|I, 7S1K\|1\|I, 7Z20\|1\|b, 7N1P\|1\|23, 7LVK\|1\|I, 4YBB\|1\|DA, 6PC6\|1\|I, 6PC7\|1\|I, 6PCR\|1\|I, 6PJ6\|1\|I, 6XZ7\|1\|A, 7BL4\|1\|A, 7K00\|1\|a, 7ZP8\|1\|b	(0)	(0)

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).

#S	PDB	Title	Method	Resolution	Length
1	7O1A\|1\|BA	Cryo-EM structure of an Escherichia coli TnaC(R23F)-ribosome complex stalled in response to L-tryptophan	ELECTRON MICROSCOPY	2.4	2874
2	7ZP8\|1\|b	70S E. coli ribosome with a stalled filamin domain 5 nascent chain	ELECTRON MICROSCOPY	2.2	2901
3	7Z20\|1\|b	70S E. coli ribosome with an extended uL23 loop from Candidatus marinimicrobia and a stalled filamin domain 5 nascent chain	ELECTRON MICROSCOPY	2.29	2901
4	7S1K\|1\|I	Cfr-modified Escherichia coli stalled ribosome with antibiotic radezolid	ELECTRON MICROSCOPY	2.42	2875
5	7S1H\|1\|I	Wild-type Escherichia coli ribosome with antibiotic linezolid	ELECTRON MICROSCOPY	2.35	2876
6	7S1G\|1\|I	wild-type Escherichia coli stalled ribosome with antibiotic linezolid	ELECTRON MICROSCOPY	2.48	2874
7	7S1I\|1\|I	Wild-type Escherichia coli stalled ribosome with antibiotic radezolid	ELECTRON MICROSCOPY	2.48	2874
8	7S1J\|1\|I	Wild-type Escherichia coli ribosome with antibiotic radezolid	ELECTRON MICROSCOPY	2.47	2876
9	7N1P\|1\|23	Elongating 70S ribosome complex in a classical pre-translocation (PRE-C) conformation	ELECTRON MICROSCOPY	2.33	2882
10	7K00\|1\|a	Structure of the Bacterial Ribosome at 2 Angstrom Resolution	ELECTRON MICROSCOPY	1.98	2729
11	7PJS\|1\|A	Structure of the 70S ribosome with tRNAs in the classical pre-translocation state and apramycin (C)	ELECTRON MICROSCOPY	2.35	2880
12	7BL4\|1\|A	in vitro reconstituted 50S-ObgE-GMPPNP-RsfS particle	ELECTRON MICROSCOPY	2.4	2897
13	6PC6\|1\|I	E. coli 50S ribosome bound to compound 47	ELECTRON MICROSCOPY	2.5	2876
14	6PCR\|1\|I	E. coli 50S ribosome bound to compound 40o	ELECTRON MICROSCOPY	2.5	2876
15	6PC7\|1\|I	E. coli 50S ribosome bound to compound 46	ELECTRON MICROSCOPY	2.5	2876
16	6PJ6\|1\|I	High resolution cryo-EM structure of E.coli 50S	ELECTRON MICROSCOPY	2.2	2874
17	7LVK\|1\|I	Cfr-modified 50S subunit from Escherichia coli	ELECTRON MICROSCOPY	2.2	2876
18	4YBB\|1\|CA	High-resolution structure of the Escherichia coli ribosome	X-RAY DIFFRACTION	2.1	2876
19	4YBB\|1\|DA	High-resolution structure of the Escherichia coli ribosome	X-RAY DIFFRACTION	2.1	2883
20	6XZ7\|1\|A	E. coli 50S ribosomal subunit in complex with dirithromycin, fMet-Phe-tRNA(Phe) and deacylated tRNA(iMet).	ELECTRON MICROSCOPY	2.1	2876

Equivalence class NR_2.5_83717.100 Obsolete

Release history

Parents

Children