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Equivalence class NR_2.5_83717.106 Obsolete

#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. ÅDate
14YBB|1|DA (rep)Large subunit ribosomal RNA23S rRNAEscherichia coliBacteriaRF02541High-resolution structure of the Escherichia coli ribosomeX-ray diffraction2.12015-03-18
24YBB|1|CALarge subunit ribosomal RNA23S rRNAEscherichia coliBacteriaRF02541High-resolution structure of the Escherichia coli ribosomeX-ray diffraction2.12015-03-18
38B0X|1|aLarge subunit ribosomal RNA23S rRNAEscherichia coli BBacteriaRF02541Translating 70S ribosome in the unrotated state (P and E, tRNAs)Electron microscopy1.552022-11-30
47QQ3|1|ILarge subunit ribosomal RNA23S ribosomal RNAEscherichia coli K-12BacteriaRF02541Cryo-EM structure of the E.coli 50S ribosomal subunit in complex with the antibiotic Myxovalargin A.Electron microscopy2.12023-01-18
57ZP8|1|bLarge subunit ribosomal RNA23S rRNAEscherichia coliBacteriaRF0254170S E. coli ribosome with a stalled filamin domain 5 nascent chainElectron microscopy2.22022-08-10
67K00|1|aLarge subunit ribosomal RNA23S rRNAEscherichia coliBacteriaRF02541Structure of the Bacterial Ribosome at 2 Angstrom ResolutionElectron microscopy1.982020-09-23
76XZ7|1|ALarge subunit ribosomal RNA23S rRNAEscherichia coliBacteriaRF02541E. coli 50S ribosomal subunit in complex with dirithromycin, fMet-Phe-tRNA(Phe) and deacylated tRNA(iMet).Electron microscopy2.12020-07-22
87Z20|1|bLarge subunit ribosomal RNA23S rRNAEscherichia coliBacteriaRF0254170S E. coli ribosome with an extended uL23 loop from Candidatus marinimicrobia and a stalled filamin domain 5 nascent chainElectron microscopy2.292022-08-10
97LVK|1|ILarge subunit ribosomal RNA23S rRNAEscherichia coliBacteriaRF02541Cfr-modified 50S subunit from Escherichia coliElectron microscopy2.22021-12-15
106PJ6|1|ILarge subunit ribosomal RNA23S rRNAEscherichia coliBacteriaRF02541High resolution cryo-EM structure of E.coli 50SElectron microscopy2.22020-01-22
117N1P|1|23Large subunit ribosomal RNA23S rRNAEscherichia coli K-12BacteriaRF02541Elongating 70S ribosome complex in a classical pre-translocation (PRE-C) conformationElectron microscopy2.332021-07-14
127PJS|1|ALarge subunit ribosomal RNA23S ribosomal RNAEscherichia coliBacteriaRF02541Structure of the 70S ribosome with tRNAs in the classical pre-translocation state and apramycin (C)Electron microscopy2.352021-10-20
137S1H|1|ILarge subunit ribosomal RNA23S rRNAEscherichia coliBacteriaRF02541Wild-type Escherichia coli ribosome with antibiotic linezolidElectron microscopy2.352021-11-17
147S1K|1|ILarge subunit ribosomal RNA23S rRNAEscherichia coliBacteriaRF02541Cfr-modified Escherichia coli stalled ribosome with antibiotic radezolidElectron microscopy2.422022-01-19
157O1A|1|BALarge subunit ribosomal RNARibosomal RNA 23SEscherichia coli K-12BacteriaRF02541Cryo-EM structure of an Escherichia coli TnaC(R23F)-ribosome complex stalled in response to L-tryptophanElectron microscopy2.42021-09-01
167S1J|1|ILarge subunit ribosomal RNA23S rRNAEscherichia coliBacteriaRF02541Wild-type Escherichia coli ribosome with antibiotic radezolidElectron microscopy2.472022-03-02
177S1I|1|ILarge subunit ribosomal RNA23S rRNAEscherichia coliBacteriaRF02541Wild-type Escherichia coli stalled ribosome with antibiotic radezolidElectron microscopy2.482022-03-02
187S1G|1|ILarge subunit ribosomal RNA23S rRNAEscherichia coliBacteriaRF02541wild-type Escherichia coli stalled ribosome with antibiotic linezolidElectron microscopy2.482021-11-17
197BL4|1|ALarge subunit ribosomal RNA23S ribosomal RNAEscherichia coli K-12BacteriaRF02541in vitro reconstituted 50S-ObgE-GMPPNP-RsfS particleElectron microscopy2.42021-05-12
206PCR|1|ILarge subunit ribosomal RNA23S ribosomal RNAEscherichia coliBacteriaRF02541E. coli 50S ribosome bound to compound 40oElectron microscopy2.52020-06-17
216PC6|1|ILarge subunit ribosomal RNA23S ribosomal RNAEscherichia coliBacteriaRF02541E. coli 50S ribosome bound to compound 47Electron microscopy2.52020-06-17
226PC7|1|ILarge subunit ribosomal RNA23S ribosomal RNAEscherichia coliBacteriaRF02541E. coli 50S ribosome bound to compound 46Electron microscopy2.52020-06-17

Release history

Release3.266
Date2023-01-18

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent
NR_2.5_83717.106NR_2.5_83717.1053.266(21) 6PCR|1|I, 6PC7|1|I, 6PC6|1|I, 4YBB|1|DA, 4YBB|1|CA, 8B0X|1|a, 7ZP8|1|b, 7Z20|1|b, 7S1K|1|I, 7S1J|1|I, 7S1I|1|I, 7S1H|1|I, 7S1G|1|I, 7PJS|1|A, 7O1A|1|BA, 7N1P|1|23, 7LVK|1|I, 7K00|1|a, 7BL4|1|A, 6XZ7|1|A, 6PJ6|1|I(1) 7QQ3|1|I(0)

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child
NR_2.5_83717.106NR_2.5_83717.1073.267(22) 4YBB|1|CA, 7PJS|1|A, 7QQ3|1|I, 7S1G|1|I, 7S1H|1|I, 7S1I|1|I, 7S1J|1|I, 7S1K|1|I, 7Z20|1|b, 7ZP8|1|b, 7O1A|1|BA, 7N1P|1|23, 4YBB|1|DA, 6PC6|1|I, 6PC7|1|I, 6PCR|1|I, 6PJ6|1|I, 6XZ7|1|A, 7BL4|1|A, 7K00|1|a, 7LVK|1|I, 8B0X|1|a(0) (0)

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#SPDBTitleMethodResolutionLength
17ZP8|1|b70S E. coli ribosome with a stalled filamin domain 5 nascent chainELECTRON MICROSCOPY2.22901
27Z20|1|b70S E. coli ribosome with an extended uL23 loop from Candidatus marinimicrobia and a stalled filamin domain 5 nascent chainELECTRON MICROSCOPY2.292901
37O1A|1|BACryo-EM structure of an Escherichia coli TnaC(R23F)-ribosome complex stalled in response to L-tryptophanELECTRON MICROSCOPY2.42874
48B0X|1|aTranslating 70S ribosome in the unrotated state (P and E, tRNAs)ELECTRON MICROSCOPY1.552724
57S1K|1|ICfr-modified Escherichia coli stalled ribosome with antibiotic radezolidELECTRON MICROSCOPY2.422875
67S1H|1|IWild-type Escherichia coli ribosome with antibiotic linezolidELECTRON MICROSCOPY2.352876
77S1G|1|Iwild-type Escherichia coli stalled ribosome with antibiotic linezolidELECTRON MICROSCOPY2.482874
87S1I|1|IWild-type Escherichia coli stalled ribosome with antibiotic radezolidELECTRON MICROSCOPY2.482874
97S1J|1|IWild-type Escherichia coli ribosome with antibiotic radezolidELECTRON MICROSCOPY2.472876
107N1P|1|23Elongating 70S ribosome complex in a classical pre-translocation (PRE-C) conformationELECTRON MICROSCOPY2.332882
117K00|1|aStructure of the Bacterial Ribosome at 2 Angstrom ResolutionELECTRON MICROSCOPY1.982729
127PJS|1|AStructure of the 70S ribosome with tRNAs in the classical pre-translocation state and apramycin (C)ELECTRON MICROSCOPY2.352880
137BL4|1|Ain vitro reconstituted 50S-ObgE-GMPPNP-RsfS particleELECTRON MICROSCOPY2.42897
147QQ3|1|ICryo-EM structure of the E.coli 50S ribosomal subunit in complex with the antibiotic Myxovalargin A.ELECTRON MICROSCOPY2.12880
156PC6|1|IE. coli 50S ribosome bound to compound 47ELECTRON MICROSCOPY2.52876
166PCR|1|IE. coli 50S ribosome bound to compound 40oELECTRON MICROSCOPY2.52876
176PC7|1|IE. coli 50S ribosome bound to compound 46ELECTRON MICROSCOPY2.52876
186PJ6|1|IHigh resolution cryo-EM structure of E.coli 50SELECTRON MICROSCOPY2.22874
197LVK|1|ICfr-modified 50S subunit from Escherichia coliELECTRON MICROSCOPY2.22876
204YBB|1|CAHigh-resolution structure of the Escherichia coli ribosomeX-RAY DIFFRACTION2.12876
214YBB|1|DAHigh-resolution structure of the Escherichia coli ribosomeX-RAY DIFFRACTION2.12883
226XZ7|1|AE. coli 50S ribosomal subunit in complex with dirithromycin, fMet-Phe-tRNA(Phe) and deacylated tRNA(iMet).ELECTRON MICROSCOPY2.12876
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